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Carg18942 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18942
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr17:5756309..5757730
RNA-Seq ExpressionCarg18942
SyntenyCarg18942
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018786 - Protein of unknown function DUF2343


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575406.1 O-fucosyltransferase 5, partial [Cucurbita argyrosperma subsp. sororia]5.8e-4393.07Show/hide
Query:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF
        C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF
Subjt:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF

Query:  K
        K
Subjt:  K

KAG7013948.1 hypothetical protein SDJN02_24117, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-64100Show/hide
Query:  MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFIS
        MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFIS
Subjt:  MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFIS

Query:  FKDRIDAFVSSYAFESTASSQEVTAYCSQ
        FKDRIDAFVSSYAFESTASSQEVTAYCSQ
Subjt:  FKDRIDAFVSSYAFESTASSQEVTAYCSQ

XP_022953932.1 uncharacterized protein LOC111456340 [Cucurbita moschata]1.9e-4190.1Show/hide
Query:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF
        C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSAS+QIPSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEI TDFISF
Subjt:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF

Query:  K
        K
Subjt:  K

XP_022991797.1 uncharacterized protein LOC111488336 [Cucurbita maxima]9.3e-4190.91Show/hide
Query:  GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        G S    +GGVRVPTKPLLHWNFGTRRARLVV PIRGRNWCFSRSIDLAASDS STQIPSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEIVTDFISFK
Subjt:  GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

XP_023548427.1 uncharacterized protein LOC111807082 [Cucurbita pepo subsp. pepo]2.1e-4070.8Show/hide
Query:  MGCGGSSLHP-----------------------------------QGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTL
        MGCGGSSLHP                                   +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI STL
Subjt:  MGCGGSSLHP-----------------------------------QGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTL

Query:  KDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        KDL TKIPSSSSSKSD LSR TGRSNAEIVTDFISFK
Subjt:  KDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

TrEMBL top hitse value%identityAlignment
A0A0A0K9A3 Uncharacterized protein6.9e-2676.19Show/hide
Query:  KPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        K  LHWNFGT RARLVVFPIRGRNWCFSRSI+   SDS+S Q PST KDLWTKI SSSSSKSD LS +   +NAEIVTDFIS K
Subjt:  KPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

A0A6J1GPM4 uncharacterized protein LOC1114563409.0e-4290.1Show/hide
Query:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF
        C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSAS+QIPSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEI TDFISF
Subjt:  CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISF

Query:  K
        K
Subjt:  K

A0A6J1HLD1 uncharacterized protein LOC1114645841.0e-2487.67Show/hide
Query:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD LS ST  SNAEIVTDFISFK
Subjt:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

A0A6J1JMV6 uncharacterized protein LOC1114883364.5e-4190.91Show/hide
Query:  GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        G S    +GGVRVPTKPLLHWNFGTRRARLVV PIRGRNWCFSRSIDLAASDS STQIPSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEIVTDFISFK
Subjt:  GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

A0A6J1KLS4 uncharacterized protein LOC1114944211.0e-2487.67Show/hide
Query:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD LS ST  SNAEIVTDFISFK
Subjt:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G53760.1 unknown protein4.8e-1149.32Show/hide
Query:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        RARLVVFPI+G+ WCFSRS+D  A+ S S   P+T++ LW KI S S   +         +NAE++ DFIS K
Subjt:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK

AT1G53760.2 unknown protein4.8e-1149.32Show/hide
Query:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
        RARLVVFPI+G+ WCFSRS+D  A+ S S   P+T++ LW KI S S   +         +NAE++ DFIS K
Subjt:  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCC
AATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCAT
CGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCG
AGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCC
AATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCAT
CGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCG
AGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG
Protein sequenceShow/hide protein sequence
MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVS
SYAFESTASSQEVTAYCSQ