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Carg18981 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18981
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRAB6-interacting golgin
Genome locationCarg_Chr18:9590963..9592055
RNA-Seq ExpressionCarg18981
SyntenyCarg18981
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573875.1 hypothetical protein SDJN03_27762, partial [Cucurbita argyrosperma subsp. sororia]1.7e-49100Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKK
        LKSLGQICQKK
Subjt:  LKSLGQICQKK

KAG7012941.1 hypothetical protein SDJN02_25694, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-52100Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKKVLQSQ
        LKSLGQICQKKVLQSQ
Subjt:  LKSLGQICQKKVLQSQ

XP_022945699.1 uncharacterized protein LOC111449848 isoform X3 [Cucurbita moschata]8.3e-4997.35Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKH DEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKKVL
        LKSLGQICQKK+L
Subjt:  LKSLGQICQKKVL

XP_023542304.1 uncharacterized protein LOC111802239 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-4898.2Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQ REEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKK
        LKSLGQICQKK
Subjt:  LKSLGQICQKK

XP_023542305.1 uncharacterized protein LOC111802239 isoform X2 [Cucurbita pepo subsp. pepo]2.9e-4997.35Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQ REEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKKVL
        LKSLGQICQKK+L
Subjt:  LKSLGQICQKKVL

TrEMBL top hitse value%identityAlignment
A0A6J1G1M5 RAB6-interacting golgin1.5e-4898.2Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKH DEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKK
        LKSLGQICQKK
Subjt:  LKSLGQICQKK

A0A6J1G1N1 RAB6-interacting golgin1.5e-4898.2Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKH DEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKK
        LKSLGQICQKK
Subjt:  LKSLGQICQKK

A0A6J1G1P6 RAB6-interacting golgin4.0e-4997.35Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKH DEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKKVL
        LKSLGQICQKK+L
Subjt:  LKSLGQICQKKVL

A0A6J1HV92 RAB6-interacting golgin7.6e-4896.4Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRD+ GEMGK+LTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKK
        LKSLGQICQKK
Subjt:  LKSLGQICQKK

A0A6J1HYE2 RAB6-interacting golgin2.0e-4895.58Show/hide
Query:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
        MTSKHGDEGNGERIVSEGSRGRD+ GEMGK+LTVSTLQAREEEIERRKMEVKEKVELQLSRAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE
Subjt:  MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKE

Query:  LKSLGQICQKKVL
        LKSLGQICQKK+L
Subjt:  LKSLGQICQKKVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36355.1 Family of unknown function (DUF662)8.9e-1762.16Show/hide
Query:  QAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK
        QAREEEIER+KM VK+K++ +L  AEE  + L Q  E LE+MGDPM KEVG VRK+I+ A +E+KSL Q CQKK
Subjt:  QAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK

AT2G36410.2 Family of unknown function (DUF662)2.0e-1656.41Show/hide
Query:  VSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK
        +S  +A+E+EIE+R+MEV+E+++ QL R E++ KRL+ I EELE M DPM KEV  VRK+ID+  KELK LG   QKK
Subjt:  VSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK

AT2G36410.3 Family of unknown function (DUF662)3.1e-1755.56Show/hide
Query:  VSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKVLQ
        +S  +A+E+EIE+R+MEV+E+++ QL R E++ KRL+ I EELE M DPM KEV  VRK+ID+  KELK LG   QKKV++
Subjt:  VSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKVLQ

AT3G09980.1 Family of unknown function (DUF662)4.0e-1756.79Show/hide
Query:  KLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK
        +  +S  +A+EEEIE++KME++E+V+ QL R EE+ KRLA I EELE + DPM KEV  VRK+ID+  KELK LG   QKK
Subjt:  KLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK

AT3G52900.1 Family of unknown function (DUF662)2.5e-1962.96Show/hide
Query:  KLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK
        K+ V+  QAREEEIER+KM VKEKV+ +L  AEE  + L Q  EELE+MGDPM KEVG VRK+ID A +++KSL Q CQKK
Subjt:  KLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGTAAGCACGGAGACGAAGGAAATGGCGAGCGGATTGTATCGGAAGGAAGTCGGGGTCGAGACGATGGCGGTGAGATGGGGAAGAAACTGACCGTGTCGACATT
GCAAGCTAGAGAAGAAGAGATTGAGAGGAGGAAGATGGAAGTTAAGGAGAAGGTTGAGTTGCAGTTAAGCCGTGCTGAGGAACAAGCCAAACGCTTAGCACAAATTTGGG
AAGAGCTGGAGGTAATGGGAGATCCAATGGGGAAAGAGGTTGGTAATGTGAGAAAAAGAATAGACACAGCCAAGAAGGAACTGAAATCACTGGGACAGATCTGCCAAAAG
AAGGTGCTTCAATCTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGTAAGCACGGAGACGAAGGAAATGGCGAGCGGATTGTATCGGAAGGAAGTCGGGGTCGAGACGATGGCGGTGAGATGGGGAAGAAACTGACCGTGTCGACATT
GCAAGCTAGAGAAGAAGAGATTGAGAGGAGGAAGATGGAAGTTAAGGAGAAGGTTGAGTTGCAGTTAAGCCGTGCTGAGGAACAAGCCAAACGCTTAGCACAAATTTGGG
AAGAGCTGGAGGTAATGGGAGATCCAATGGGGAAAGAGGTTGGTAATGTGAGAAAAAGAATAGACACAGCCAAGAAGGAACTGAAATCACTGGGACAGATCTGCCAAAAG
AAGGTGCTTCAATCTCAATAA
Protein sequenceShow/hide protein sequence
MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLSRAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQK
KVLQSQ