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Carg18984 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18984
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncopper transport protein ATX1-like
Genome locationCarg_Chr18:9614201..9615948
RNA-Seq ExpressionCarg18984
SyntenyCarg18984
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573880.1 Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2872.48Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA          +   P      A +P P  
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSK
        A A  P S+
Subjt:  AKARTPHSK

KAG6601214.1 Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2895.77Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKTGKKTAYWED+A
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA

KAG7012944.1 Copper transport protein CCH [Cucurbita argyrosperma subsp. argyrosperma]4.6e-58100Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSKLHQTAVRKPPQKK
        AKARTPHSKLHQTAVRKPPQKK
Subjt:  AKARTPHSKLHQTAVRKPPQKK

XP_008446769.1 PREDICTED: copper transport protein ATX1-like [Cucumis melo]1.0e-2894.44Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWED+A+
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT

XP_022945074.1 copper transport protein ATX1-like [Cucurbita moschata]4.5e-2968.33Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA          +   P      A SP P  
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSKLHQTAVRKPPQ
        A A  P S+    A   P +
Subjt:  AKARTPHSKLHQTAVRKPPQ

TrEMBL top hitse value%identityAlignment
A0A1S3BFW4 copper transport protein ATX1-like4.9e-2994.44Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWED+A+
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT

A0A5A7SZ31 Copper transport protein ATX1-like4.9e-2994.44Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWED+A+
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEAT

A0A6J1FZY8 copper transport protein ATX1-like2.2e-2968.33Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA          +   P      A SP P  
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSKLHQTAVRKPPQ
        A A  P S+    A   P +
Subjt:  AKARTPHSKLHQTAVRKPPQ

A0A6J1GZL9 copper transport protein ATX1-like8.3e-2995.77Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKTGKKTAYWED+A
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA

A0A6J1JL25 copper transport protein ATX1-like8.3e-2995.77Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA
        MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKTGKKTAYWED+A
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEA

SwissProt top hitse value%identityAlignment
B3H6D0 Heavy metal-associated isoprenylated plant protein 451.7e-1050.82Show/hide
Query:  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW
        L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   YW
Subjt:  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW

F4IQG4 Heavy metal-associated isoprenylated plant protein 301.3e-0740Show/hide
Query:  QTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW
        QT  LKV M C GC   V+  + KL GV++ +++++ ++VTV G VER  V + V + GK+  +W
Subjt:  QTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW

O82089 Copper transport protein CCH2.9e-2355.83Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKTGKKT+YW  EA  + K    P     T+ +  A++    K
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSKLHQTAVRKPPQ
          A+         A  KP Q
Subjt:  AKARTPHSKLHQTAVRKPPQ

Q84J88 Heavy metal-associated isoprenylated plant protein 369.2e-0940.62Show/hide
Query:  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW
        T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+    W
Subjt:  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW

Q94BT9 Copper transport protein ATX17.7e-2475.71Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE
        MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KTGKKTA+WE E
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE

Arabidopsis top hitse value%identityAlignment
AT1G66240.1 homolog of anti-oxidant 15.5e-2575.71Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE
        MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KTGKKTA+WE E
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE

AT1G66240.2 homolog of anti-oxidant 16.3e-2175Show/hide
Query:  MSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE
        M+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KTGKKTA+WE E
Subjt:  MSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE

AT3G56240.1 copper chaperone2.1e-2455.83Show/hide
Query:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK
        M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKTGKKT+YW  EA  + K    P     T+ +  A++    K
Subjt:  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNK

Query:  AKARTPHSKLHQTAVRKPPQ
          A+         A  KP Q
Subjt:  AKARTPHSKLHQTAVRKPPQ

AT3G56891.1 Heavy metal transport/detoxification superfamily protein1.2e-1150.82Show/hide
Query:  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW
        L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   YW
Subjt:  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW

AT5G27690.1 Heavy metal transport/detoxification superfamily protein6.5e-1040.62Show/hide
Query:  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW
        T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+    W
Subjt:  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACAT
TGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAA
AGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTG
CACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
GCAGAGATTGGCGAGGGCGAATTTCCCGAGTGTCTGTAATCTTTAACCATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAG
ACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTT
CCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAA
TCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA
Protein sequenceShow/hide protein sequence
MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKL
HQTAVRKPPQKK