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Carg19027 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19027
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20
Genome locationCarg_Chr18:9853039..9853341
RNA-Seq ExpressionCarg19027
SyntenyCarg19027
Gene Ontology termsNA
InterPro domainsIPR036378 - FAS1 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012985.1 hypothetical protein SDJN02_25739, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-43100Show/hide
Query:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLSSSIPFLASLLISRMPQIARVGAPRFPRCWPIDRSR
        MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLSSSIPFLASLLISRMPQIARVGAPRFPRCWPIDRSR
Subjt:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLSSSIPFLASLLISRMPQIARVGAPRFPRCWPIDRSR

XP_022945764.1 LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbita moschata]5.7e-2290.79Show/hide
Query:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS-SSIPFLASLL
        MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS  SI  L++ L
Subjt:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS-SSIPFLASLL

XP_022957384.1 putative fasciclin-like arabinogalactan protein 20 [Cucurbita moschata]7.7e-1175.86Show/hide
Query:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        PS+T+L+   ILSDNGFVSMA+ L+LIA+SLLSQ+NS+TIF+PSDTAF QSGQPSLSL
Subjt:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

XP_022983481.1 putative fasciclin-like arabinogalactan protein 20 [Cucurbita maxima]7.7e-1175.86Show/hide
Query:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        PS+T+L+   ILSDNGFVSMA+ L+LIA+SLLSQ+NS+TIF+PSDTAF QSGQPSLSL
Subjt:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

XP_023514866.1 putative fasciclin-like arabinogalactan protein 20 [Cucurbita pepo subsp. pepo]5.9e-1163.29Show/hide
Query:  MASTLFIS------------HPSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        MASTL +S             PS+T+L+   ILSDNGFVSMA+ L+LIA+SLLSQ+NS+TIF+PSDTAF QSGQPSLSL
Subjt:  MASTLFIS------------HPSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

TrEMBL top hitse value%identityAlignment
A0A1S3BFP5 putative fasciclin-like arabinogalactan protein 208.3e-1164.1Show/hide
Query:  ASTLFISHPSLTLLS---------------ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        +STLFIS   L+L S               ILSDNGFVSMA+ L+LIA+SLLSQSNSITIFSP DT+F QSGQPSLSL
Subjt:  ASTLFISHPSLTLLS---------------ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

A0A6J1DAK1 putative fasciclin-like arabinogalactan protein 208.3e-1177.59Show/hide
Query:  PSLTLL---SILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        PS T+L    ILSDNGFVSMA+ L+LIA+SLLS SNS+TIFSPSD AFAQSGQPSLSL
Subjt:  PSLTLL---SILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

A0A6J1G1W2 LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 202.8e-2290.79Show/hide
Query:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS-SSIPFLASLL
        MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS  SI  L++ L
Subjt:  MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLS-SSIPFLASLL

A0A6J1H1S8 putative fasciclin-like arabinogalactan protein 203.7e-1175.86Show/hide
Query:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        PS+T+L+   ILSDNGFVSMA+ L+LIA+SLLSQ+NS+TIF+PSDTAF QSGQPSLSL
Subjt:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

A0A6J1J2F0 putative fasciclin-like arabinogalactan protein 203.7e-1175.86Show/hide
Query:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL
        PS+T+L+   ILSDNGFVSMA+ L+LIA+SLLSQ+NS+TIF+PSDTAF QSGQPSLSL
Subjt:  PSLTLLS---ILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G40940.1 putative fasciclin-like arabinogalactan protein 209.8e-0444.9Show/hide
Query:  LSILSDNGFVSMAVMLQLIAQSL-LSQSNSITIFSPSDTAFAQSGQPSL
        + +LSD+G++SM + L+L  Q L L     +T+F+PSD +F++ GQPSL
Subjt:  LSILSDNGFVSMAVMLQLIAQSL-LSQSNSITIFSPSDTAFAQSGQPSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTT
GCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTC
TACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTT
GCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTC
TACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAA
Protein sequenceShow/hide protein sequence
MASTLFISHPSLTLLSILSDNGFVSMAVMLQLIAQSLLSQSNSITIFSPSDTAFAQSGQPSLSLSSSIPFLASLLISRMPQIARVGAPRFPRCWPIDRSR