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Carg19062 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19062
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionVQ domain-containing protein
Genome locationCarg_Chr18:10052178..10052534
RNA-Seq ExpressionCarg19062
SyntenyCarg19062
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-60100Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPLFTPRSL
        MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPLFTPRSL
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPLFTPRSL

Query:  VNSLSPSFMEFLKGLPEF
        VNSLSPSFMEFLKGLPEF
Subjt:  VNSLSPSFMEFLKGLPEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]3.0e-2263.73Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED
        MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALVQRLTGC+PP     PS           DN+ SS V TEED
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED

Query:  SN
         N
Subjt:  SN

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]5.9e-2654.81Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP

Query:  L----------FTPRSLVNSLSPSFMEFLKGLPEF
        +          F+  + ++SLSPSFM+FLK LPEF
Subjt:  L----------FTPRSLVNSLSPSFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]2.0e-2955.42Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC

Query:  --------------------------PLFTPR--------------SLVNSLSPSFMEFLKGLPEF
                                  PLFTP                L NSLSPSFMEFLKGLPEF
Subjt:  --------------------------PLFTPR--------------SLVNSLSPSFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]5.9e-2651.25Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPN------------ADKAPSDNNDSSSVVTEE
        MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALVQRLTG +PP             +++  +DN+ SS + TEE
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPN------------ADKAPSDNNDSSSVVTEE

Query:  D--------------------SNCPL----------FTPRSLVNSLSPSFMEFLKGLPEF
        +                    SN  L          F+  +L+NSLSPSFMEFLK LPEF
Subjt:  D--------------------SNCPL----------FTPRSLVNSLSPSFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein7.3e-3057.53Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED
        MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALVQRLTGC+PP     PS           DN+ SS V TEED
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED

Query:  -----SNC------------PLFTPRSLVNSLSPSFMEFLKGLPEF
             SNC            P  +P  L +SLSPSFM+FLK LPEF
Subjt:  -----SNC------------PLFTPRSLVNSLSPSFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like2.9e-2654.81Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP

Query:  L----------FTPRSLVNSLSPSFMEFLKGLPEF
        +          F+  + ++SLSPSFM+FLK LPEF
Subjt:  L----------FTPRSLVNSLSPSFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 82.9e-2654.81Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNCP

Query:  L----------FTPRSLVNSLSPSFMEFLKGLPEF
        +          F+  + ++SLSPSFM+FLK LPEF
Subjt:  L----------FTPRSLVNSLSPSFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic9.5e-3055.42Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC

Query:  --------------------------PLFTPR--------------SLVNSLSPSFMEFLKGLPEF
                                  PLFTP                L NSLSPSFMEFLKGLPEF
Subjt:  --------------------------PLFTPR--------------SLVNSLSPSFMEFLKGLPEF

W9RYA3 VQ domain-containing protein2.4e-1738.62Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADK----------------------
        MSP K   I+G RP PL ++K S TI KPS      PPQ  +PVIIYTHSP+IIHT+P++FMA+VQ LTG S  N +K                      
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADK----------------------

Query:  ---------APSDNNDSSSVVTEEDSN---------------CPLFTPRSLVNS--------------------LSPSFMEFLKGLPEF
                 A SDNN+SSSV+T+E +N                PLFTP    +                     +SPSF+EF+KGLPE+
Subjt:  ---------APSDNNDSSSVVTEEDSN---------------CPLFTPRSLVNS--------------------LSPSFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B1.2e-0533.61Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT +P+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPLFTPRSLVN
            +D++  + T   L++
Subjt:  VVTEEDSNCPLFTPRSLVN

Q8LGD5 Protein MKS11.2e-0847.89Show/hide
Query:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS
        I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +FM +VQRLTG S
Subjt:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS

Q9CA36 VQ motif-containing protein 8, chloroplastic3.6e-1041.01Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE----DS
        M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG    +     + +  SSSVVTEE    D 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE----DS

Query:  N-----------------CPLFTPRSLVNSLSPSFMEFL
        N                  PLFTP S+    SP+ + ++
Subjt:  N-----------------CPLFTPRSLVNSLSPSFMEFL

Q9LS54 VQ motif-containing protein 207.3e-1153.73Show/hide
Query:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD
        P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG +  + D
Subjt:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding8.5e-0733.61Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT +P+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPLFTPRSLVN
            +D++  + T   L++
Subjt:  VVTEEDSNCPLFTPRSLVN

AT1G21326.1 VQ motif-containing protein1.6e-0836.97Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R I GPRP PL +   S  I K  P         PPQ  +           PVIIYT SP+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPLFTPRSLVN
            +D++  + T   L++
Subjt:  VVTEEDSNCPLFTPRSLVN

AT1G68450.1 VQ motif-containing protein2.6e-1141.01Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE----DS
        M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG    +     + +  SSSVVTEE    D 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE----DS

Query:  N-----------------CPLFTPRSLVNSLSPSFMEFL
        N                  PLFTP S+    SP+ + ++
Subjt:  N-----------------CPLFTPRSLVNSLSPSFMEFL

AT3G18360.1 VQ motif-containing protein5.2e-1253.73Show/hide
Query:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD
        P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG +  + D
Subjt:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD

AT3G18690.1 MAP kinase substrate 18.2e-1047.89Show/hide
Query:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS
        I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +FM +VQRLTG S
Subjt:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCG
CCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAG
CGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTGTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAG
TTTCTCAAAGGGCTGCCGGAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCG
CCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAG
CGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTGTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAG
TTTCTCAAAGGGCTGCCGGAATTTTAA
Protein sequenceShow/hide protein sequence
MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPLFTPRSLVNSLSPSFME
FLKGLPEF