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Carg19110 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19110
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At1g03560, mitochondrial-like
Genome locationCarg_Chr11:12410323..12411160
RNA-Seq ExpressionCarg19110
SyntenyCarg19110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589207.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6986.67Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVK---------------------VGINAMFYA
        MRRTLWKADPFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVK                     VGINAMFYA
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVK---------------------VGINAMFYA

Query:  SLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN
        SLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN
Subjt:  SLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN

KAG7011962.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-1152.75Show/hide
Query:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN
        VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI               DQTV +YTILIDGLFKE  N
Subjt:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN

KAG7011962.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0264.58Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF
        MRRTL +   FL SSSR L  LD KSYSL RNGKLS  +SDCN   GF
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF

KAG7011962.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-1152.75Show/hide
Query:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN
        VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI               DQTV +YTILIDGLFKE  N
Subjt:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN

KAG7022907.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-74100Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLK
        MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLK
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLK

Query:  KCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN
        KCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN
Subjt:  KCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN

XP_022930699.1 pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cucurbita moschata]3.3e-5563.86Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGIN--------------------------
        MRRTLWKA PFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVK  ++                          
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGIN--------------------------

Query:  --------------------------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEA
                                    F+  L      +DGLGKAVRELKMQTI LKKCSSARDSYCCKAIMDSLAK GKIDQTVCSYTILIDGL KEA
Subjt:  --------------------------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEA

Query:  YN
        YN
Subjt:  YN

XP_023554431.1 pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucurbita pepo subsp. pepo]1.5e-0264.58Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF
        MRRTL +   FL SSSR L  LD KSYSL RNGKLS  +SDCN   GF
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF

TrEMBL top hitse value%identityAlignment
A0A6J1D2R3 pentatricopeptide repeat-containing protein At1g03560, mitochondrial9.2e-1152.69Show/hide
Query:  VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN
        V INAMFYAS++DGLGKA R    E   + +  K C  ARDSYC  A++D+LAK GKI               DQTV +YTILIDGLFKE  N
Subjt:  VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN

A0A6J1ES80 pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like1.6e-5563.86Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGIN--------------------------
        MRRTLWKA PFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVK  ++                          
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGIN--------------------------

Query:  --------------------------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEA
                                    F+  L      +DGLGKAVRELKMQTI LKKCSSARDSYCCKAIMDSLAK GKIDQTVCSYTILIDGL KEA
Subjt:  --------------------------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEA

Query:  YN
        YN
Subjt:  YN

A0A6J1GLU6 pentatricopeptide repeat-containing protein At1g03560, mitochondrial4.9e-1252.75Show/hide
Query:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN
        VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI               DQTV +YTILIDGLFKE  N
Subjt:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN

A0A6J1GLU6 pentatricopeptide repeat-containing protein At1g03560, mitochondrial1.2e-0262.5Show/hide
Query:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF
        MRRTL +   FL SSSR L  LD KSYSL RNGK+S  +SDCN   GF
Subjt:  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF

A0A6J1GLU6 pentatricopeptide repeat-containing protein At1g03560, mitochondrial5.4e-1151.96Show/hide
Query:  LFAFVK---VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEA
        LF F +   V INAMFYASL+DGLGKA R    E   + +  K C  ARDSYC  AI+D+LAK GKI               DQTV ++TILIDGLFKE 
Subjt:  LFAFVK---VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEA

Query:  YN
         N
Subjt:  YN

A0A6J1I1D4 pentatricopeptide repeat-containing protein At1g03560, mitochondrial4.9e-1252.75Show/hide
Query:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN
        VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI               DQTV +YTILIDGLFKE  N
Subjt:  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---------------DQTVCSYTILIDGLFKEAYN

SwissProt top hitse value%identityAlignment
Q9LR67 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial2.2e-0941.24Show/hide
Query:  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI----------------DQTVCSYTILIDGLFKEAYN
        F  + IN+MFY+SL+DGLGKA R    E   + +  K C+  RDSYC  A++D+  K  K+                DQTV +YTIL+ G+FKE  N
Subjt:  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI----------------DQTVCSYTILIDGLFKEAYN

Arabidopsis top hitse value%identityAlignment
AT1G03560.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.6e-1041.24Show/hide
Query:  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI----------------DQTVCSYTILIDGLFKEAYN
        F  + IN+MFY+SL+DGLGKA R    E   + +  K C+  RDSYC  A++D+  K  K+                DQTV +YTIL+ G+FKE  N
Subjt:  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI----------------DQTVCSYTILIDGLFKEAYN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGAACCCTGTGGAAGGCGGATCCATTCCTTCGCTCTTCATCTCGACGCCTTCATTCACTTGATCGCAAATCATATTCTCTGAATCGAAATGGGAAACTTTCTTC
GAAGAACTCAGATTGCAATGCCGCTTGCGGTTTCTTTCCAGTGGCTCCTTCTTTGCCGCCATCTGAGAGTAAGCAAGCGACCTTGTTTGCGTTCGTCAAAGTGGGAATCA
ATGCCATGTTTTATGCGAGTTTAGTTGATGGCCTTGGTAAGGCTGTGAGAGAATTGAAGATGCAGACAATCTGTTTGAAGAAATGTTCAAGTGCTCGAGATTCATATTGT
TGTAAGGCCATTATGGATTCTCTAGCCAAGCGTGGGAAGATCGATCAAACAGTTTGTTCATACACAATTCTTATTGATGGGTTGTTCAAGGAAGCATATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGAACCCTGTGGAAGGCGGATCCATTCCTTCGCTCTTCATCTCGACGCCTTCATTCACTTGATCGCAAATCATATTCTCTGAATCGAAATGGGAAACTTTCTTC
GAAGAACTCAGATTGCAATGCCGCTTGCGGTTTCTTTCCAGTGGCTCCTTCTTTGCCGCCATCTGAGAGTAAGCAAGCGACCTTGTTTGCGTTCGTCAAAGTGGGAATCA
ATGCCATGTTTTATGCGAGTTTAGTTGATGGCCTTGGTAAGGCTGTGAGAGAATTGAAGATGCAGACAATCTGTTTGAAGAAATGTTCAAGTGCTCGAGATTCATATTGT
TGTAAGGCCATTATGGATTCTCTAGCCAAGCGTGGGAAGATCGATCAAACAGTTTGTTCATACACAATTCTTATTGATGGGTTGTTCAAGGAAGCATATAACTGA
Protein sequenceShow/hide protein sequence
MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLKKCSSARDSYC
CKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN