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Carg19113 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19113
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic-like
Genome locationCarg_Chr11:12419807..12420313
RNA-Seq ExpressionCarg19113
SyntenyCarg19113
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
GO:0010207 - photosystem II assembly (biological process)
GO:0071484 - cellular response to light intensity (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domainsIPR025585 - Photosystem II Pbs27
IPR038450 - Photosystem II Pbs27 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589210.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.0e-84100Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]9.7e-8398.21Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASRTLLTPCTSKSQPLIIPPKPKSTISAAA+HH RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]1.0e-6885.47Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV
        MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL PPAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV

Query:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Subjt:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]6.3e-8297.62Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASR LLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.4e-8398.81Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
TrEMBL top hitse value%identityAlignment
A0A0A0K1S2 Uncharacterized protein7.1e-6380.47Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHR-RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL
        MAS TL+TPCTSKSQ   IP KPKSTISAA      RRRE LSLTASVLA  +VL P +PA A++D+EYVKDTNEVI KVRTTI MD+NDPNVA AVA+L
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHR-RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL

Query:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        RESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like4.7e-8398.21Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASRTLLTPCTSKSQPLIIPPKPKSTISAAA+HH RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like5.1e-6985.47Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV
        MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL PPAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV

Query:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Subjt:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like5.1e-6985.47Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV
        MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL PPAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAV

Query:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Subjt:  AELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like3.1e-8297.62Show/hide
Query:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR
        MASR LLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELR
Subjt:  MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
SwissProt top hitse value%identityAlignment
Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic1.0e-5065.09Show/hide
Query:  ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL
        A+ TLL P     +P II       +     +H  RR+ LSL  T+++L      L PAP  A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAEL
Subjt:  ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL

Query:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        RE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Subjt:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic4.5e-0625Show/hide
Query:  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
        +TI  + +  +   E L     V+ A   L  P     S  E    Y+K   EV+  +R ++K + K++     +    +ES   +++ +R +K++ G  
Subjt:  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA

Query:  SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL
        S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Subjt:  SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL
Arabidopsis top hitse value%identityAlignment
AT1G03600.1 photosystem II family protein7.3e-5265.09Show/hide
Query:  ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL
        A+ TLL P     +P II       +     +H  RR+ LSL  T+++L      L PAP  A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAEL
Subjt:  ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAEL

Query:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
        RE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Subjt:  RESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
AT1G05385.1 photosystem II 11 kDa protein-related3.2e-0725Show/hide
Query:  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
        +TI  + +  +   E L     V+ A   L  P     S  E    Y+K   EV+  +R ++K + K++     +    +ES   +++ +R +K++ G  
Subjt:  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA

Query:  SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL
        S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Subjt:  SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCG
CCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATG
AGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTAC
AGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGC
GAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCG
CCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATG
AGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTAC
AGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGC
GAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA
Protein sequenceShow/hide protein sequence
MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKY
RKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR