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Carg19115 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19115
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Genome locationCarg_Chr11:12424594..12427146
RNA-Seq ExpressionCarg19115
SyntenyCarg19115
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV09927.1 hypothetical chloroplast RF2, chloroplastic [Tanacetum cinerariifolium]6.3e-0844.3Show/hide
Query:  LISKFSEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDRASSDPKE
        ++ +  E  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+S+CC PPK R S+  ++
Subjt:  LISKFSEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDRASSDPKE

KAG6589212.1 Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1097.44Show/hide
Query:  RASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC
        +ASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC
Subjt:  RASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC

KAG7022912.1 hypothetical protein SDJN02_16648, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-94100Show/hide
Query:  MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDRASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVG
        MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDRASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVG
Subjt:  MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDRASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVG

Query:  EENETPFISENPKTLRGNSKGKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR
        EENETPFISENPKTLRGNSKGKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR
Subjt:  EENETPFISENPKTLRGNSKGKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR

KAG8473527.1 hypothetical protein CXB51_035663 [Gossypium anomalum]3.4e-0973.81Show/hide
Query:  SEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR
        +EF  CLSPSV++HPLGPATDHRL Y VL A+SSCC PPK R
Subjt:  SEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR

MBA0642196.1 hypothetical protein [Gossypium klotzschianum]4.4e-0986.49Show/hide
Query:  CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR
        CLSPSV+DHPLG ATDHRLAYGVLA ISSCC PPK R
Subjt:  CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR

TrEMBL top hitse value%identityAlignment
A0A3P6D4D0 Uncharacterized protein1.2e-0753.03Show/hide
Query:  EFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR
        E  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSCC PPK R
Subjt:  EFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR

A0A6A5N1F4 Uncharacterized protein4.0e-0853.73Show/hide
Query:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR
        SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSCC PPK R
Subjt:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR

A0A6D2I544 Uncharacterized protein (Fragment)1.2e-0753.85Show/hide
Query:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPK
        SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSCC PPK
Subjt:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPK

A0A6D2LA75 Uncharacterized protein4.0e-0853.73Show/hide
Query:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR
        SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSCC PPK R
Subjt:  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCCFPPKDR

A0A7J8TVE3 Uncharacterized protein2.1e-0986.49Show/hide
Query:  CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR
        CLSPSV+DHPLG ATDHRLAYGVLA ISSCC PPK R
Subjt:  CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGCTTTTTCCCGACAAAAATCGATCATATACTTTTGATCTCTAAATTTTCTGAGTTTGAGCCGTGTCTCAGTCCCAGTGTGTCTGATCATCCTCTTGGACCAGC
TACTGATCATCGTCTTGCGTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTTCCCTCCAAAGGACAGAGCTTCTTCGGACCCTAAAGAACTCACCACAGTCCTCCGTG
AGAGCTCTAATCCTAATCTTCGAACCATCCGTGGCTTGAGAATATCCCTCCATGAGCAAGCCCTCGAGGCATGTGTTGGAGAGGAGAACGAAACACCATTTATAAGCGAA
AACCCGAAAACCTTGAGGGGAAACTCGAAGGGAAAAACCCAAAGAGGACAGTATCTGGATGAGTATCGGTCGTGGCCACCACCACAAGGCGGCAGTCGACTCGGTCAGGG
CGGTGAGAGCTCAGCCGAAAGGGAAAGTCGTCTGGGCGCCGTAACGCAGGCAGAAGTGAGGCACGCGGCGATGATAGGGAAGCGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGCTTTTTCCCGACAAAAATCGATCATATACTTTTGATCTCTAAATTTTCTGAGTTTGAGCCGTGTCTCAGTCCCAGTGTGTCTGATCATCCTCTTGGACCAGC
TACTGATCATCGTCTTGCGTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTTCCCTCCAAAGGACAGAGCTTCTTCGGACCCTAAAGAACTCACCACAGTCCTCCGTG
AGAGCTCTAATCCTAATCTTCGAACCATCCGTGGCTTGAGAATATCCCTCCATGAGCAAGCCCTCGAGGCATGTGTTGGAGAGGAGAACGAAACACCATTTATAAGCGAA
AACCCGAAAACCTTGAGGGGAAACTCGAAGGGAAAAACCCAAAGAGGACAGTATCTGGATGAGTATCGGTCGTGGCCACCACCACAAGGCGGCAGTCGACTCGGTCAGGG
CGGTGAGAGCTCAGCCGAAAGGGAAAGTCGTCTGGGCGCCGTAACGCAGGCAGAAGTGAGGCACGCGGCGATGATAGGGAAGCGTAGATAA
Protein sequenceShow/hide protein sequence
MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDRASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVGEENETPFISE
NPKTLRGNSKGKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR