CuGenDBv2

Gene ID	Carg19174
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L6
Genome location	Carg_Chr19:8211845..8213352
RNA-Seq Expression	Carg19174
Synteny	Carg19174
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0005840 - ribosome (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000702 - Ribosomal protein L6 IPR002358 - Ribosomal protein L6, conserved site IPR019906 - Ribosomal protein L6, bacterial-type IPR020040 - Ribosomal protein L6, alpha-beta domain IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572299.1 50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.9e-59

100

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

KAG7011912.1 50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

8.9e-59

100

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

XP_022930651.1 50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata]

2.0e-58

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

XP_022952947.1 50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]

1.2e-58

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

XP_023554603.1 50S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.2e-58

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C3Z5 50S ribosomal protein L6, chloroplastic

2.1e-58

98.29

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

A0A6J1ER61 50S ribosomal protein L6, chloroplastic isoform X2

9.6e-59

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

A0A6J1ERI9 50S ribosomal protein L6, chloroplastic isoform X1

9.6e-59

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

A0A6J1GLT4 50S ribosomal protein L6, chloroplastic-like

5.6e-59

99.15

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

A0A6J1HVU0 50S ribosomal protein L6, chloroplastic-like

4.8e-58

98.29

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPV MAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        YADE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

SwissProt top hits

e value

%identity

Alignment

A0PXW1 50S ribosomal protein L6

6.9e-38

64.35

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        +HGL R L +NMVVGV++G+EK L+LVGVGYRA L+GKDL LNLG+SHPV +   +G++ KV E T++ VSG DK  +G  AA+IR WR PEPYKGKG+K
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGK
        YA EV+RRKEGK GK
Subjt:  YADEVVRRKEGKAGK

A6TWG7 50S ribosomal protein L6

8.2e-39

66.96

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        +HGL RTL  NMV GV+KG+EKKL+LVGVGYRA ++GK LVL+LGFSHPV +  PEGL ++V   T++TV G DK  +G FAA IR++R PEPYKGKGV+
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGK
        YA EVVRRKEGK GK
Subjt:  YADEVVRRKEGKAGK

O23049 50S ribosomal protein L6, chloroplastic

2.6e-53

85.47

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        Y+DE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

P82193 50S ribosomal protein L6, chloroplastic

1.2e-53

86.32

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIP+ LQVKVEENT++TVSG DK  +GQFAA+IR WRPPEPYKGKGV+
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        Y DEVVRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

Q18CH5 50S ribosomal protein L6

1.3e-39

66.38

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Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        +HGL RTL DNMVVGV+ GFEKKL+L GVGYRA  +GK LV+NLGFSHPV M  PEG+ V+    T + V G DK  +G +AA IR WR PEPYKGKG+K
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKK
        Y DEV+RRKEGK GKK
Subjt:  YADEVVRRKEGKAGKK

Arabidopsis top hits

e value

%identity

Alignment

AT1G05190.1 Ribosomal protein L6 family

1.9e-54

85.47

Show/hide

Query:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
        MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVK
Subjt:  MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK

Query:  YADEVVRRKEGKAGKKK
        Y+DE+VRRKEGKAGKKK
Subjt:  YADEVVRRKEGKAGKKK

AT2G18400.1 ribosomal protein L6 family protein

1.0e-20

47.96

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Query:  FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK
        F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Subjt:  FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK

Sequences

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CDS sequence

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ATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGG
AAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATG
ATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAG
GGGAAGGCAGGGAAGAAGAAGTGA

mRNA sequence

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TTTTAATCCATAGAATTCTTGCGATCGCATTGATGGCTCATGCTATAGTTCCTCAGGATCTCATGCATTTTTGAAATGGAGAGAAAAATAGATATCTAGCACATTTTTTC
TACATTGACTGTATGAGTCATAACTGGTATATTGTGAGGAAGACTGATAGAAGTGCAAGGAATCACAGAATTGCTAAGCCAAATCCAATCACCGTGCCCATCTCATGGTA
AAACATCACATGGCAAGGGTCAGGATTGAAAGTTAAGGTGTCCTTTGAGACTTCATATTCCTTATCCGACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTAAG
GGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTC
AATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAG
GTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGG
AGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTT
GTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGATAGTTCTTTTTTTAACCTCCTTCCTCTTCTGGATAATGTTTTGGTTCACTATCATCATTACTTTC
CCAGTTCCACCACATTTTTATCAGTTGGGTAAATGGCACTAACTCCAAAAAGATACCAAATAAGGTGAAAGATGGATGACAAGATTCTTGTTTAGATTTAAAGAGCTTTT
GTTGTATTTTTTAAGTTTTAGAGAATTGTCTTTGAACTAGTGGCTATTATGGTATTGATGACCACAAAGATATTAGATAGGTTAATGAAAGTTGCATATAAAGCTGGTTT
GTTCCTGGATATTTTTTGTGTTTAGATTTGCGTGTTAGAGTCATTCAAGTAGTCTTAATTACGAGTTTTCTTTACTCTTGATCATCAAGGTAATCTGTTTCTAAACTTTC
CCTTGGGTTGATTCCTTGTCG

Protein sequence

Show/hide protein sequence

MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKE
GKAGKKK

Carg19174 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome