CuGenDBv2

Gene ID	Carg19227
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	Carg_Chr19:8449859..8450380
RNA-Seq Expression	Carg19227
Synteny	Carg19227
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

9.7e-86

100

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

2.2e-69

86.13

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VA+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

2.0e-83

98.84

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITPSTSKSQPLIIPLKPKSSI+AAA TTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

XP_023554625.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.3e-85

99.42

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITPSTSKSQPLI+PLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

6.7e-71

87.28

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AAAT TT     RRR+FLSLTASVLAPSWVLFP +PALASSD+EYVKDT+EVIGKVR TITMD+NDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

1.1e-69

86.13

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VA+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

1.4e-69

85.55

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VA+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

1.4e-69

85.55

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AA TT T     RRR+FLSL+ASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VA+LRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

9.8e-84

98.84

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITPSTSKSQPLIIPLKPKSSI+AAA TTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

9.8e-84

98.84

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Query:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
        MASPTLITPSTSKSQPLIIPLKPKSSI+AAA TTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA
Subjt:  MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

2.9e-48

63.22

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Query:  ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAA
        A+ TL+ P+    +P II     SS++        +H   RR+FLSL  T+++L  S     PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA 
Subjt:  ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        AVAELRE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.1e-04

26.09

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Query:  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR
        LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + 
Subjt:  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR

Query:  KARILEEMATAEKAL
        K  IL+++  AE+ L
Subjt:  KARILEEMATAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

2.0e-49

63.22

Show/hide

Query:  ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAA
        A+ TL+ P+    +P II     SS++        +H   RR+FLSL  T+++L  S     PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA 
Subjt:  ASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSL--TASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
        AVAELRE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

8.1e-06

26.09

Show/hide

Query:  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR
        LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + 
Subjt:  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR

Query:  KARILEEMATAEKAL
        K  IL+++  AE+ L
Subjt:  KARILEEMATAEKAL

Sequences

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CDS sequence

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ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCA
CCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACG
TGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCT
TGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGAC
GGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

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Protein sequence

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MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNS
WVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR

Carg19227 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome