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Carg19284 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19284
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationCarg_Chr03:9777763..9778131
RNA-Seq ExpressionCarg19284
SyntenyCarg19284
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]7.6e-5389.17Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFPRFFGFFRF
KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-62100Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRFVF
Subjt:  AALRSRWCDCFPRFFGFFRFVF
XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]1.8e-62100Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRFVF
Subjt:  AALRSRWCDCFPRFFGFFRFVF
XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]5.3e-6299.18Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRF F
Subjt:  AALRSRWCDCFPRFFGFFRFVF
XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]5.3e-6299.18Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRF F
Subjt:  AALRSRWCDCFPRFFGFFRFVF
TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein4.8e-5388.33Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFPRFFGFFRF
A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A3.7e-5389.17Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFPRFFGFFRF
A0A6J1CYB8 uncharacterized protein LOC1110157121.0e-4285.85Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSR
        AALRSR
Subjt:  AALRSR
A0A6J1EJR7 uncharacterized protein LOC1114332388.8e-63100Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRFVF
Subjt:  AALRSRWCDCFPRFFGFFRFVF
A0A6J1ISV4 uncharacterized protein LOC1114781152.6e-6299.18Show/hide
Query:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
        MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL
Subjt:  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKL

Query:  AALRSRWCDCFPRFFGFFRFVF
        AALRSRWCDCFPRFFGFFRF F
Subjt:  AALRSRWCDCFPRFFGFFRFVF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein3.0e-0738.1Show/hide
Query:  VRDSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF
        + D +  ++L+YTSLKD++ +S         P YS  ++     +E + SNI I NELVKRAAS Y+QS+ I++  + + F  F
Subjt:  VRDSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACCCTCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGATTCCGACGCCGGCGATGACCTCCGCTACACCAGCTTGAA
GGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAACATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGT
ATCTTCAATCGGCGGCGATCTTGGTCGGCCGGAACGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGC
TTTCCCCGCTTTTTTGGCTTCTTTAGGTTTGTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGACCCTCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGATTCCGACGCCGGCGATGACCTCCGCTACACCAGCTTGAA
GGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAACATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGT
ATCTTCAATCGGCGGCGATCTTGGTCGGCCGGAACGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGC
TTTCCCCGCTTTTTTGGCTTCTTTAGGTTTGTCTTTTAG
Protein sequenceShow/hide protein sequence
MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDC
FPRFFGFFRFVF