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Carg19288 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19288
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDEAD-box ATP-dependent RNA helicase 1
Genome locationCarg_Chr03:9787747..9790861
RNA-Seq ExpressionCarg19288
SyntenyCarg19288
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026449.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-0989.47Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

KAG7034739.1 hypothetical protein SDJN02_04469, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-50100Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPANFLFILNHLNVLEKLKEKVESERKHIHVFQSAQTKRYELLQRKRKGKLAAYDYRSVLTDC
        MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPANFLFILNHLNVLEKLKEKVESERKHIHVFQSAQTKRYELLQRKRKGKLAAYDYRSVLTDC
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPANFLFILNHLNVLEKLKEKVESERKHIHVFQSAQTKRYELLQRKRKGKLAAYDYRSVLTDC

Query:  VKLIK
        VKLIK
Subjt:  VKLIK

XP_022146667.1 DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Momordica charantia]9.0e-1092.11Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

XP_022146668.1 DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Momordica charantia]9.0e-1092.11Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

XP_022926614.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata]4.5e-0989.47Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

TrEMBL top hitse value%identityAlignment
A0A1S3AZ50 DEAD-box ATP-dependent RNA helicase 13.1e-0886.49Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLD
        MAEKQKRK IPVLPWMRSPVDVSL EEC  EILP+LD
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLD

A0A6J1CZ56 DEAD-box ATP-dependent RNA helicase 1 isoform X24.3e-1092.11Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

A0A6J1D077 DEAD-box ATP-dependent RNA helicase 1 isoform X14.3e-1092.11Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

A0A6J1EFN8 DEAD-box ATP-dependent RNA helicase 12.2e-0989.47Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

A0A6J1KPB8 DEAD-box ATP-dependent RNA helicase 12.2e-0989.47Show/hide
Query:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP
        M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Subjt:  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGA
CCCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGTCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCAGAGTGCGCAAA
CGAAAAGATATGAACTCCTCCAAAGAAAAAGAAAAGGAAAACTTGCAGCTTATGATTATCGATCAGTTTTAACCGATTGTGTTAAACTAATAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGA
CCCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGTCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCAGAGTGCGCAAA
CGAAAAGATATGAACTCCTCCAAAGAAAAAGAAAAGGAAAACTTGCAGCTTATGATTATCGATCAGTTTTAACCGATTGTGTTAAACTAATAAAATAA
Protein sequenceShow/hide protein sequence
MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPANFLFILNHLNVLEKLKEKVESERKHIHVFQSAQTKRYELLQRKRKGKLAAYDYRSVLTDCVKLIK