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Carg19301 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19301
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box protein SKIP19-like
Genome locationCarg_Chr03:9882982..9884466
RNA-Seq ExpressionCarg19301
SyntenyCarg19301
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581461.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]1.9e-6297.67Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
        MESSPSSEEVARNWLESPADIMPMILLKLGAIDIL NVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQI+LENSLFCVPLTS
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS

Query:  QVRESVAILPIFCENFGNCWMVLPFPEIS
        QVRESVAILPIFCEN GNCWMVLPFPEIS
Subjt:  QVRESVAILPIFCENFGNCWMVLPFPEIS

KAG7034752.1 putative F-box/LRR-repeat protein 9, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-65100Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
        MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS

Query:  QVRESVAILPIFCENFGNCWMVLPFPEIS
        QVRESVAILPIFCENFGNCWMVLPFPEIS
Subjt:  QVRESVAILPIFCENFGNCWMVLPFPEIS

XP_022146630.1 F-box protein SKIP19-like [Momordica charantia]1.3e-1054.32Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD-------------------DLEIICIDAVD
        MES+P S + ARNWLE PADI  MILLKLGAI+IL +  +VCS WRKICKD                   DLE +CI AVD
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD-------------------DLEIICIDAVD

XP_022926026.1 uncharacterized protein LOC111433264 [Cucurbita moschata]5.0e-6397.67Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
        M+S+PSSEEVARNWLESPADIMPMILLKLGAIDIL NVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS

Query:  QVRESVAILPIFCENFGNCWMVLPFPEIS
        QVRESVAILPIFCENFGNCWMVLPFPEIS
Subjt:  QVRESVAILPIFCENFGNCWMVLPFPEIS

XP_023543620.1 putative F-box/LRR-repeat protein 9 [Cucurbita pepo subsp. pepo]1.9e-4993.91Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
        M+S+PSSEEVARNWLESPADIM MILLKLGAIDIL N+LNVCSSWRKI KDDLEIICIDAVDVNLLISILSSSTPMT SSISLGAQINLENSLFCVPLTS
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS

Query:  QVRESVAILPIFCEN
        QVRESVAILPIFCEN
Subjt:  QVRESVAILPIFCEN

TrEMBL top hitse value%identityAlignment
A0A6J1CXS5 F-box protein SKIP19-like6.3e-1154.32Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD-------------------DLEIICIDAVD
        MES+P S + ARNWLE PADI  MILLKLGAI+IL +  +VCS WRKICKD                   DLE +CI AVD
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD-------------------DLEIICIDAVD

A0A6J1CYW9 putative F-box/LRR-repeat protein 231.2e-0951.25Show/hide
Query:  SSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD
        S+P+SEE ARNWLE PAD   MIL+KLGA+DIL N   VCS WRKIC D                    DLE +C+ AVD
Subjt:  SSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD

A0A6J1EDR1 uncharacterized protein LOC1114332642.4e-6397.67Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
        M+S+PSSEEVARNWLESPADIMPMILLKLGAIDIL NVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTS

Query:  QVRESVAILPIFCENFGNCWMVLPFPEIS
        QVRESVAILPIFCENFGNCWMVLPFPEIS
Subjt:  QVRESVAILPIFCENFGNCWMVLPFPEIS

A0A6J1ILH5 F-box protein SKIP19-like2.7e-0969.23Show/hide
Query:  SSPSS-EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL
        SSP+S  E ARNWLE PAD+  MILLKLG +DIL N  +VCSSWRKIC+D L
Subjt:  SSPSS-EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL

A0A6J1KRP9 F-box protein SKIP19-like1.2e-0968.63Show/hide
Query:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        MES P SE+ A NWL+ P D+M  ILLKL A DIL NV NVCSSWR+ICKD
Subjt:  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 222.9e-0547.83Show/hide
Query:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL
        EE   NW E P D++  ILL+L  ++IL N   VC SWR++ KD L
Subjt:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL

Q9M0U8 Putative F-box/LRR-repeat protein 213.8e-0550Show/hide
Query:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        RNW++ P ++   ILL+L   DIL N   VC  WR+ICKD
Subjt:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD

Q9M0U9 F-box protein SKIP197.7e-0639.02Show/hide
Query:  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD
        S P++ EV  + NW E P ++   IL +LGAI+IL N   VC SWR++CKD                    +LEI+C  AVD
Subjt:  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD

Q9S9V8 Putative F-box/LRR-repeat protein 91.5e-0655Show/hide
Query:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        RNW E P ++   ILL+LGAI+IL N   VC SWR++C+D
Subjt:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD

Q9S9V9 Putative F-box/LRR-repeat protein 231.3e-0539.44Show/hide
Query:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD
        RNW E P+ +   ILL+LGAI+IL N   VC  W ++CKD                    DLE +C  AVD
Subjt:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein5.5e-0739.02Show/hide
Query:  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD
        S P++ EV  + NW E P ++   IL +LGAI+IL N   VC SWR++CKD                    +LEI+C  AVD
Subjt:  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------------------DLEIICIDAVD

AT4G05470.1 RNI-like superfamily protein2.7e-0650Show/hide
Query:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        RNW++ P ++   ILL+L   DIL N   VC  WR+ICKD
Subjt:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD

AT4G05475.1 RNI-like superfamily protein1.3e-0543.18Show/hide
Query:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        +E   NW++ P ++   ILL+L   DIL N   +C +WR+ICKD
Subjt:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD

AT4G05490.1 RNI-like superfamily protein2.1e-0647.83Show/hide
Query:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL
        EE   NW E P D++  ILL+L  ++IL N   VC SWR++ KD L
Subjt:  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL

AT4G05497.1 RNI-like superfamily protein1.1e-0755Show/hide
Query:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD
        RNW E P ++   ILL+LGAI+IL N   VC SWR++C+D
Subjt:  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCAGCCCCAGCTCGGAAGAGGTAGCGAGGAACTGGCTTGAGTCGCCTGCAGACATCATGCCCATGATTCTGCTAAAGCTAGGTGCCATTGATATCCTTTGCAA
CGTGCTAAACGTCTGTTCTTCGTGGCGTAAGATCTGCAAGGACGATTTGGAGATCATATGCATAGACGCTGTTGACGTCAATTTGTTGATATCAATATTGAGTTCTTCGA
CTCCGATGACTTTCTCCTCCATATCTCTCGGAGCTCAGATCAACTTAGAAAACTCCCTGTTTTGCGTTCCTTTAACATCTCAGGTGAGGGAATCAGTTGCCATTCTCCCC
ATTTTCTGTGAAAACTTCGGAAACTGTTGGATGGTGTTGCCCTTTCCTGAAATCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCAGCCCCAGCTCGGAAGAGGTAGCGAGGAACTGGCTTGAGTCGCCTGCAGACATCATGCCCATGATTCTGCTAAAGCTAGGTGCCATTGATATCCTTTGCAA
CGTGCTAAACGTCTGTTCTTCGTGGCGTAAGATCTGCAAGGACGATTTGGAGATCATATGCATAGACGCTGTTGACGTCAATTTGTTGATATCAATATTGAGTTCTTCGA
CTCCGATGACTTTCTCCTCCATATCTCTCGGAGCTCAGATCAACTTAGAAAACTCCCTGTTTTGCGTTCCTTTAACATCTCAGGTGAGGGAATCAGTTGCCATTCTCCCC
ATTTTCTGTGAAAACTTCGGAAACTGTTGGATGGTGTTGCCCTTTCCTGAAATCTCTTGA
Protein sequenceShow/hide protein sequence
MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILP
IFCENFGNCWMVLPFPEIS