; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19337 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19337
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCoatomer subunit epsilon
Genome locationCarg_Chr03:10080109..10081125
RNA-Seq ExpressionCarg19337
SyntenyCarg19337
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0015031 - protein transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006822 - Coatomer, epsilon subunit
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034786.1 Coatomer subunit epsilon-2 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-66100Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

XP_008439506.1 PREDICTED: coatomer subunit epsilon-1-like [Cucumis melo]1.2e-6294.81Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPT LQAVKLLALYLSDPS+KESTIASLQEWLSD AI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NNPTLRLIAGIIFMHEQD+NEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

XP_022925729.1 coatomer subunit epsilon-2-like [Cucurbita moschata]2.3e-66100Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

XP_022977651.1 coatomer subunit epsilon-2-like [Cucurbita maxima]8.7e-6699.26Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+LSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

XP_023544573.1 coatomer subunit epsilon-2-like [Cucurbita pepo subsp. pepo]2.3e-66100Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

TrEMBL top hitse value%identityAlignment
A0A0A0KIF7 Coatomer subunit epsilon6.3e-6294.07Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDD IERDSIVFRSYIALGSYQLAISEIDSSAPT LQAVKLLALYLSDPSSKESTIASLQEWLSD AI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NN TLRLIAGIIFMHEQD+NEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

A0A1S3AYY0 Coatomer subunit epsilon5.7e-6394.81Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPT LQAVKLLALYLSDPS+KESTIASLQEWLSD AI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NNPTLRLIAGIIFMHEQD+NEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

A0A5A7UFG1 Coatomer subunit epsilon1.7e-6294.07Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPT LQAVKLLALYLSDP +KESTIASLQEWLSD AI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NNPTLRLIAGIIFMHEQD+NEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

A0A6J1ED13 Coatomer subunit epsilon1.1e-66100Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

A0A6J1IKJ5 Coatomer subunit epsilon4.2e-6699.26Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MAAPDHLFNLRNNFYLGAYQAAINNS+LSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

SwissProt top hitse value%identityAlignment
A2XY73 Coatomer subunit epsilon-28.3e-3557.55Show/hide
Query:  AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLS
        A+PDHLF LR +FY+GAYQA I         + LSPD   ERDS+++RSYIA+GS+QL I EI   A T LQAV+LLA+YLS     KES I  L E L+
Subjt:  AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLS

Query:  DLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        D A+ +NP LRL+AG + MHE+D+  ALKHTN+GGTMEL
Subjt:  DLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

O64748 Coatomer subunit epsilon-22.1e-5477.61Show/hide
Query:  AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIA
        A PDHLFNLRNNFYLGAYQ AINNS ++NLSP++A+ERD +VFRSYIALGSYQL ISEID SA T LQAVKLLA+YLS P +KESTI+SL+EWL+D  I 
Subjt:  AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIA

Query:  NNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        NN TLRLIAGIIFMHE+D+NE LKHT+AGGTM+L
Subjt:  NNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

P0C541 Coatomer subunit epsilon-22.8e-3557.55Show/hide
Query:  AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLS
        A+PDHLF LRN+FY+GAYQA I         + LSPD   ERDS+++RSYIA+GS+QL I EI   A T LQAV+LL +YLS     KES I  L E L+
Subjt:  AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLS

Query:  DLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        D A+ +NP LRL+AG + MHE+D+  ALKHTN+GGTMEL
Subjt:  DLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

Q9MAX6 Coatomer subunit epsilon-14.5e-4975.56Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MA+PD LFNLRN FYLGAYQAAINNS++  L  D A ERD+IVFRSY+ALGSYQL ISEIDSSA TSLQAVKLLALYLS    KES I SL+EWLSD A+
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         +NP LRLIAGIIFMHEQD+ EALKHT++GGT++L
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

Q9SA78 Coatomer subunit epsilon-11.1e-5071.85Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MA PDHLFNLRN+FYLGAYQAAINNS + NLS +D +ERD +V R+YIALGSYQL ISEID +A T LQAVKLLA+YLS P +KESTI+SL+EWL+D  +
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NN  +RLIAG IFMHE+D+NEALKHT++GGTM+L
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

Arabidopsis top hitse value%identityAlignment
AT1G30630.1 Coatomer epsilon subunit7.6e-5271.85Show/hide
Query:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI
        MA PDHLFNLRN+FYLGAYQAAINNS + NLS +D +ERD +V R+YIALGSYQL ISEID +A T LQAVKLLA+YLS P +KESTI+SL+EWL+D  +
Subjt:  MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAI

Query:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
         NN  +RLIAG IFMHE+D+NEALKHT++GGTM+L
Subjt:  ANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

AT2G34840.1 Coatomer epsilon subunit1.5e-5577.61Show/hide
Query:  AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIA
        A PDHLFNLRNNFYLGAYQ AINNS ++NLSP++A+ERD +VFRSYIALGSYQL ISEID SA T LQAVKLLA+YLS P +KESTI+SL+EWL+D  I 
Subjt:  AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIA

Query:  NNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        NN TLRLIAGIIFMHE+D+NE LKHT+AGGTM+L
Subjt:  NNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

AT2G34840.2 Coatomer epsilon subunit1.6e-2073.33Show/hide
Query:  LYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL
        +YLS P +KESTI+SL+EWL+D  I NN TLRLIAGIIFMHE+D+NE LKHT+AGGTM+L
Subjt:  LYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCACCAGATCATTTGTTCAATCTGAGAAATAATTTCTATTTGGGAGCGTATCAGGCAGCCATTAACAACAGTAATCTCTCCAATCTCTCACCCGATGACGCAAT
CGAGAGGGATTCTATTGTTTTCCGCTCCTACATTGCCCTTGGCAGCTATCAGCTAGCCATCAGCGAGATCGACTCATCCGCCCCGACGTCTCTCCAAGCCGTCAAATTGC
TCGCTCTTTATCTGTCCGATCCTAGTAGCAAGGAATCAACCATCGCAAGTCTACAGGAATGGTTATCAGATCTAGCCATTGCAAACAATCCTACCTTGAGGCTAATTGCA
GGAATCATATTCATGCATGAGCAAGACTTTAATGAAGCCCTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAA
mRNA sequenceShow/hide mRNA sequence
TTTTGTTAAGCGTTCAGTTGCTTCGTCGGTTTTCTCTTCTCTTTTATTTCTCTCTCTTTTATTTCTCTCTCTTTTATTTCTCCCGGTCTGCTAGATTCAGATATAGAGGA
AGGAGCTTGGACGAGAAGGAAACCATGGCAGCACCAGATCATTTGTTCAATCTGAGAAATAATTTCTATTTGGGAGCGTATCAGGCAGCCATTAACAACAGTAATCTCTC
CAATCTCTCACCCGATGACGCAATCGAGAGGGATTCTATTGTTTTCCGCTCCTACATTGCCCTTGGCAGCTATCAGCTAGCCATCAGCGAGATCGACTCATCCGCCCCGA
CGTCTCTCCAAGCCGTCAAATTGCTCGCTCTTTATCTGTCCGATCCTAGTAGCAAGGAATCAACCATCGCAAGTCTACAGGAATGGTTATCAGATCTAGCCATTGCAAAC
AATCCTACCTTGAGGCTAATTGCAGGAATCATATTCATGCATGAGCAAGACTTTAATGAAGCCCTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAA
Protein sequenceShow/hide protein sequence
MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIA
GIIFMHEQDFNEALKHTNAGGTMEL