; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19338 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19338
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationCarg_Chr03:10081574..10082428
RNA-Seq ExpressionCarg19338
SyntenyCarg19338
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]2.4e-14297.54Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]6.4e-14398.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]1.0e-145100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

XP_022977653.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]7.5e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]7.5e-14498.94Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein1.2e-14297.54Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein3.1e-14398.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein2.0e-14298.23Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein5.1e-146100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein3.6e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
        ARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'2.2e-4553.49Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP   GPPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP

Query:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             RP   P  P  +PP     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'1.1e-4453.1Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+GRG PPP   GPPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP

Query:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             RP   P  P  +PP     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'5.8e-4649.45Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFS
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPPG      
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPP
                      PP   + PMG PPTG        PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPP

Q9PV94 Small nuclear ribonucleoprotein-associated protein B'7.0e-4452.71Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP
         A  GPG+GRAAGRG+P  AP+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP    PG+     G  PPP+ RG PPP   GPPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP

Query:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             RP   PP   P P + A  PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'4.9e-4553.1Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP   GPPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPP

Query:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             RP   P  P  +PP     PMG PP G  MR    PP PGM  PPP PG+ PP
Subjt:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein1.3e-8569.82Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFS
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  G+G    GPPP + 
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFS

Query:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQN
            G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P++ PP PGMPP P   + QQ+
Subjt:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAAAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCTAAGGGTAAAAAGACTAATGAGGAACGCGACGAGCGTCGTACCCTTGGGCTTGTTCTTC
TTCGCGGCGAGGAGGTCATTTCCATGACTGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGTCGT
GCCGCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCCATGACATATCCAGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGACAAGCTCCACCTC
CGGTTGGGAGAGGAATGCCTCCGCCGGGGCCTCCGCCACAGTTCTCTGCAGCAAGACCAGGGGGAGCTCCGCCACAACCATTCCCAGTTCCTCCTCAATTTGCTCAGAGA
CCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCCCCACCCAGACCTGGAATGCCAGCGCCCCCGCCTCGACCGGGGATGCCTCCTCCACCCGGTGG
GGCAGTTCCTATTTACGGACCACCTCGTCCTGGCATGCCGCCTCCACCCGCCCCACAAAATCAGCAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAAAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCTAAGGGTAAAAAGACTAATGAGGAACGCGACGAGCGTCGTACCCTTGGGCTTGTTCTTC
TTCGCGGCGAGGAGGTCATTTCCATGACTGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGTCGT
GCCGCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAGGCTCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCACAGCTGTCCGCTCCGCCCATGACATATCCAGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGACAAGCTCCACCTC
CGGTTGGGAGAGGAATGCCTCCGCCGGGGCCTCCGCCACAGTTCTCTGCAGCAAGACCAGGGGGAGCTCCGCCACAACCATTCCCAGTTCCTCCTCAATTTGCTCAGAGA
CCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCCCCACCCAGACCTGGAATGCCAGCGCCCCCGCCTCGACCGGGGATGCCTCCTCCACCCGGTGG
GGCAGTTCCTATTTACGGACCACCTCGTCCTGGCATGCCGCCTCCACCCGCCCCACAAAATCAGCAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQR
PMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ