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Carg19405 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19405
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 1
Genome locationCarg_Chr19:6789226..6789498
RNA-Seq ExpressionCarg19405
SyntenyCarg19405
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572045.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4498.89Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID
        MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYR SGGGTRGNISFWID
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID

KAG7011712.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-44100Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID
        MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID

XP_022952072.1 protein RADIALIS-like 1 [Cucurbita moschata]1.3e-3897.59Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKT EEVERHYALLVEDVKFIESGQVPFPYRTSGGGT+G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

XP_022972517.1 protein RADIALIS-like 1 [Cucurbita maxima]4.3e-3793.98Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLV+DVKFIESGQVPFPY+TSGGGT+G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

XP_023511620.1 3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo]1.6e-3695.12Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTR
        MASMSSHGSA TWTVKQNKAFEQALAVYDQDTPD+WLNVAKAVPGKTAEEVE HYALLVEDVKFIESGQVPFPYRTSGGGT+
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTR

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein2.2e-3491.57Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLVEDVKFIESGQVPFPYRTSGGG +G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

A0A1S3BFW6 protein RADIALIS-like 12.8e-3491.57Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLVEDVKFIESGQVPFPYRTSG G +G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

A0A5A7SYK4 Protein RADIALIS-like 15.7e-3591.67Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGN
        MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLVEDVKFIESGQVPFPYRTSG G +GN
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGN

A0A6J1GJE9 protein RADIALIS-like 16.5e-3997.59Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKT EEVERHYALLVEDVKFIESGQVPFPYRTSGGGT+G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

A0A6J1I508 protein RADIALIS-like 12.1e-3793.98Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG
        MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLV+DVKFIESGQVPFPY+TSGGGT+G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.5e-2770.93Show/hide
Query:  ASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTRGNIS
        +SMSS  S+G+WT KQNKAFEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV+D+  IE+G VPFP YRTSGG T G +S
Subjt:  ASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTRGNIS

Q1A173 Protein RADIALIS-like 61.7e-2062.65Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR
        MAS +S  S   WT  QNK FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LVED+  IE+G+VP P Y+T    +R
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR

Q58FS3 Transcription factor RADIALIS1.8e-2565.82Show/hide
Query:  SSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR
        S+ GS   W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEV++HY +LVED+K+IESG+VPFP YRT+GG  +
Subjt:  SSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR

Q6NNN0 Protein RADIALIS-like 31.0e-2064.56Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSG
        MAS +S  S+ +WT K+NK FE+ALA YDQDTPDRW NVA+AV GK+AEEV RHY LL+ DV  IESG+ P P YR++G
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSG

Q9SIJ5 Protein RADIALIS-like 21.5e-2468.24Show/hide
Query:  SMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YR-TSGGGTRGNI
        SMSS+GS G+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D++ IE+G VPFP Y+ T+G   RG +
Subjt:  SMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YR-TSGGGTRGNI

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.6e-2162.65Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR
        MAS SS  S+ +WT KQNK FE+ALAVYD+DTPDRW NVAKAV  K+AEEV+RHY +LVED+  IE   VP P Y+T   G++
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR

AT1G75250.1 RAD-like 61.2e-2162.65Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR
        MAS +S  S   WT  QNK FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LVED+  IE+G+VP P Y+T    +R
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR

AT1G75250.2 RAD-like 61.2e-2162.65Show/hide
Query:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR
        MAS +S  S   WT  QNK FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LVED+  IE+G+VP P Y+T    +R
Subjt:  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTR

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2568.24Show/hide
Query:  SMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YR-TSGGGTRGNI
        SMSS+GS G+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D++ IE+G VPFP Y+ T+G   RG +
Subjt:  SMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YR-TSGGGTRGNI

AT4G39250.1 RAD-like 11.8e-2870.93Show/hide
Query:  ASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTRGNIS
        +SMSS  S+G+WT KQNKAFEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV+D+  IE+G VPFP YRTSGG T G +S
Subjt:  ASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFP-YRTSGGGTRGNIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTTCCCATGGATCAGCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCT
GAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCGGGTCAAGTTCCCTTTCCCT
ATCGAACCTCTGGAGGAGGTACTCGAGGTAATATAAGTTTTTGGATTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTTCCCATGGATCAGCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCT
GAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCGGGTCAAGTTCCCTTTCCCT
ATCGAACCTCTGGAGGAGGTACTCGAGGTAATATAAGTTTTTGGATTGATTAG
Protein sequenceShow/hide protein sequence
MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVEDVKFIESGQVPFPYRTSGGGTRGNISFWID