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Carg19406 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19406
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 1
Genome locationCarg_Chr19:6781430..6781666
RNA-Seq ExpressionCarg19406
SyntenyCarg19406
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]6.4e-2985.53Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGR
        MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IESGE+PFPY R
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGR

KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.9e-2885.9Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+DVK IESG+VPFPY  SR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]6.4e-2987.18Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+DVK IESG+VPFPY  SR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

XP_022136072.1 protein RADIALIS-like 1 [Momordica charantia]2.4e-2883.12Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        MASMSAHGS G+W+A QNKAFE+ALAVYD+DTP+RWLNVA AIGGKTEEEVKRHYQLL++DVK IESGEVPFPY  S
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]9.2e-36100Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

TrEMBL top hitse value%identityAlignment
A0A1S3BGF6 protein RADIALIS-like 13.1e-2987.18Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+DVK IESG+VPFPY  SR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

A0A5A7SYM4 Protein RADIALIS-like 19.0e-2985.9Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+DVK IESG+VPFPY  SR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

A0A5A7T3V4 Protein RADIALIS-like 13.1e-2985.53Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGR
        MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IESGE+PFPY R
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGR

A0A6J1C4J2 protein RADIALIS-like 11.2e-2883.12Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        MASMSAHGS G+W+A QNKAFE+ALAVYD+DTP+RWLNVA AIGGKTEEEVKRHYQLL++DVK IESGEVPFPY  S
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS

A0A6J1GKK4 protein RADIALIS-like 14.5e-36100Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
        MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.8e-2469.74Show/hide
Query:  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP  R+
Subjt:  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS

Q1A173 Protein RADIALIS-like 62.2e-1963.01Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++D+  IE+G VP P
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

Q58FS3 Transcription factor RADIALIS2.7e-2263.01Show/hide
Query:  SAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        S  GS   W+AK+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++L++D+K IESG+VPFP  R+
Subjt:  SAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS

Q6NNN0 Protein RADIALIS-like 33.0e-2164.94Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        MAS S   SA SWT K+NK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL++DV  IESG  P P  RS
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS

Q9SIJ5 Protein RADIALIS-like 21.1e-2371.83Show/hide
Query:  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D++ IE+G VPFP
Subjt:  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.0e-2063.01Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        MAS S+  S+ SWT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +L++D+  IE   VP P
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

AT1G75250.1 RAD-like 61.5e-2063.01Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++D+  IE+G VP P
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

AT1G75250.2 RAD-like 61.5e-2063.01Show/hide
Query:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++D+  IE+G VP P
Subjt:  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

AT2G21650.1 Homeodomain-like superfamily protein7.8e-2571.83Show/hide
Query:  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP
        SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D++ IE+G VPFP
Subjt:  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFP

AT4G39250.1 RAD-like 12.7e-2569.74Show/hide
Query:  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS
        +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP  R+
Subjt:  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCT
CAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCAT
ATGGAAGGTCCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCT
CAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCAT
ATGGAAGGTCCAGATGA
Protein sequenceShow/hide protein sequence
MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR