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Carg19407 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19407
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 1
Genome locationCarg_Chr19:6771403..6777889
RNA-Seq ExpressionCarg19407
SyntenyCarg19407
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011710.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-34100Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMKFH
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMKFH
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMKFH

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]5.2e-2378.26Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGS  WTA++NKAFEKALA++D+DTP+RW+NVAKAIGGKTE+EVKRHYQLL++DVKHIES  +
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]7.0e-2897.1Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIES  I
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]5.9e-2794.2Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGSSAWTARENKAFEKALAVFDQDTP+RWVNVAKAIGGKTEDEVKRHYQLLV DVKHIES  I
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]5.2e-2379.71Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMS+HGS+AWTA +NK FEKALAV+DQDTPERW+NVAKA+G KTE+EVKRHYQLL+ DVKHIES N+
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein3.9e-2484.06Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+EVKRHYQLL++DV HIES  I
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

A0A1S3BGF6 protein RADIALIS-like 12.5e-2378.26Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGS  WTA++NKAFEKALA++D+DTP+RW+NVAKAIGGKTE+EVKRHYQLL++DVKHIES  +
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

A0A6J1C385 protein RADIALIS-like 13.3e-2379.71Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMS+HGSSAWTA++NKAFEKALAV+DQDTPERW+NVAKA+GGKT +EVKRHY+LLV+DVK IES  +
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

A0A6J1GKV1 protein RADIALIS-like 13.4e-2897.1Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIES  I
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

A0A6J1I8Y0 protein RADIALIS-like 12.9e-2794.2Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI
        MASMSAHGSSAWTARENKAFEKALAVFDQDTP+RWVNVAKAIGGKTEDEVKRHYQLLV DVKHIES  I
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENI

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.8e-1958.11Show/hide
Query:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        +SMS+  S +WTA++NKAFE+ALA +DQDTP RW NVAK +GGKT +EVKRHY+LLV+D+  IE+ ++   N +
Subjt:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

Q1A173 Protein RADIALIS-like 63.4e-1757.33Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVKRHY +LV+D+ +IE+  + + N K
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

Q6NNN0 Protein RADIALIS-like 34.0e-1862.12Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIES
        MAS S   S++WT +ENK FE+ALA +DQDTP+RW NVA+A+GGK+ +EV+RHY+LL++DV  IES
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIES

Q8GW75 Protein RADIALIS-like 51.5e-1754.67Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        MAS S   SS+WT+++NK FE+ALAV+D+DTP+RW NVAKA+G K+ +EVKRHY +LV+D+ +IE + + +   K
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

Q9SIJ5 Protein RADIALIS-like 28.1e-1957.53Show/hide
Query:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        SMS++GS +WT ++NKAFE+ALAV+DQDTP+RW NVA+A+GGKT +E KR Y LLV+D++ IE+ ++   + K
Subjt:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-1854.67Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        MAS S   SS+WT+++NK FE+ALAV+D+DTP+RW NVAKA+G K+ +EVKRHY +LV+D+ +IE + + +   K
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

AT1G75250.1 RAD-like 62.4e-1857.33Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVKRHY +LV+D+ +IE+  + + N K
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

AT1G75250.2 RAD-like 62.4e-1857.33Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +EVKRHY +LV+D+ +IE+  + + N K
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

AT2G21650.1 Homeodomain-like superfamily protein5.7e-2057.53Show/hide
Query:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        SMS++GS +WT ++NKAFE+ALAV+DQDTP+RW NVA+A+GGKT +E KR Y LLV+D++ IE+ ++   + K
Subjt:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK

AT4G39250.1 RAD-like 12.0e-2058.11Show/hide
Query:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK
        +SMS+  S +WTA++NKAFE+ALA +DQDTP RW NVAK +GGKT +EVKRHY+LLV+D+  IE+ ++   N +
Subjt:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAAGAGAAAACAAAGCGTTTGAGAAAGCTTTGGCTGTGTTTGATCAAGACACACCTGAGAGATGGGTCAA
TGTTGCTAAGGCCATTGGTGGAAAAACTGAAGATGAAGTCAAGAGGCATTATCAACTTCTTGTGAAGGATGTTAAGCATATTGAGTCTGAGAATATAATGATGAGAAACA
TGAAGTTCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAAGAGAAAACAAAGCGTTTGAGAAAGCTTTGGCTGTGTTTGATCAAGACACACCTGAGAGATGGGTCAA
TGTTGCTAAGGCCATTGGTGGAAAAACTGAAGATGAAGTCAAGAGGCATTATCAACTTCTTGTGAAGGATGTTAAGCATATTGAGTCTGAGAATATAATGATGAGAAACA
TGAAGTTCCATTGA
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKDVKHIESENIMMRNMKFH