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Carg19408 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19408
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 1
Genome locationCarg_Chr19:6766025..6766551
RNA-Seq ExpressionCarg19408
SyntenyCarg19408
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]8.0e-41100Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]1.5e-3488.51Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]8.0e-41100Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]2.3e-4098.82Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]2.0e-3692.94Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSS GSNAWT MQNK FEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPY +SSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 27.0e-3588.51Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG

A0A5D3D8F6 Protein RADIALIS-like 27.0e-3588.51Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY--RNSSDDLPRKRG

A0A6J1C6U4 protein RADIALIS-like 13.0e-3386.05Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSS-DDLPRKRG
        MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY+ S+ DD P KRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSS-DDLPRKRG

A0A6J1GK35 protein RADIALIS-like 13.9e-41100Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

A0A6J1I517 protein RADIALIS-like 11.1e-4098.82Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.8e-2368.42Show/hide
Query:  ASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNS
        +SMSS+ S +WT  QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP YR S
Subjt:  ASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNS

Q58FS3 Transcription factor RADIALIS4.7e-2058.97Show/hide
Query:  SSRGS-NAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDL
        S+RGS   W+  +NKAFE+ALAVYD+DTP+RW NVA+AV  +T EEVK+HY++L+ D+K+IESG VPFP YR +  ++
Subjt:  SSRGS-NAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDL

Q6NNN0 Protein RADIALIS-like 32.3e-1958.75Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDD
        MAS S   S +WT  +NK FE+ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ DV  IESG  P P YR++ ++
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDD

Q8GW75 Protein RADIALIS-like 56.2e-2056.47Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MAS S   S++WT  QNK FE+ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P   + D   + RG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

Q9SIJ5 Protein RADIALIS-like 23.9e-2262.65Show/hide
Query:  SMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDLPRKR
        SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y+ ++ +  R R
Subjt:  SMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDLPRKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.4e-2156.47Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG
        MAS S   S++WT  QNK FE+ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P   + D   + RG
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG

AT1G75250.1 RAD-like 64.8e-2063.89Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S    + WT  QNK FE+ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

AT1G75250.2 RAD-like 64.8e-2063.89Show/hide
Query:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S    + WT  QNK FE+ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P
Subjt:  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

AT2G21650.1 Homeodomain-like superfamily protein2.7e-2362.65Show/hide
Query:  SMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDLPRKR
        SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y+ ++ +  R R
Subjt:  SMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNSSDDLPRKR

AT4G39250.1 RAD-like 15.5e-2468.42Show/hide
Query:  ASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNS
        +SMSS+ S +WT  QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP YR S
Subjt:  ASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YRNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCCTCTCGTGGCTCAAATGCATGGACTCCAATGCAAAACAAGGCCTTTGAAAAGGCTTTGGCTGTGTATGATCAAGACACCCCTGAGAGATGGCTCAA
TGTTGCCAAGGCTGTTGGGGAGAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTACACGATGTCAAACATATCGAGTCGGGCAATGTTCCGTTTCCTTATC
GAAACTCTAGCGATGATTTGCCGAGGAAAAGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCCTCTCGTGGCTCAAATGCATGGACTCCAATGCAAAACAAGGCCTTTGAAAAGGCTTTGGCTGTGTATGATCAAGACACCCCTGAGAGATGGCTCAA
TGTTGCCAAGGCTGTTGGGGAGAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTACACGATGTCAAACATATCGAGTCGGGCAATGTTCCGTTTCCTTATC
GAAACTCTAGCGATGATTTGCCGAGGAAAAGAGGATGA
Protein sequenceShow/hide protein sequence
MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYRNSSDDLPRKRG