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Carg19412 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19412
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Genome locationCarg_Chr19:6740871..6742541
RNA-Seq ExpressionCarg19412
SyntenyCarg19412
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022952105.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]7.5e-4098.94Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_022972526.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita maxima]1.2e-3797.87Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSLL AAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIA SLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]7.7e-2980.85Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRS+L A    GSRSMAGRTRTL   TL P+P SSSS+G  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_023553689.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]5.7e-40100Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_038887804.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]2.4e-3085.11Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSLL AAA   SRSMAGRTRTLAH TL P+ VSSSSRGF SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCW WLSEGF TPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

TrEMBL top hitse value%identityAlignment
A0A1S3BGG1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like9.2e-2880.85Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASV RSLL AAAA  SRSMAGRTR LAH TL P+ VSSSSR F S++RI SSLA+V+SLMPLH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A5D3BYV0 Protein NUCLEAR FUSION DEFECTIVE 69.2e-2880.85Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASV RSLL AAAA  SRSMAGRTR LAH TL P+ VSSSSR F S++RI SSLA+V+SLMPLH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.9e-2882.11Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPV-SSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MA+VCRSLL AA   GSRS+AGRTRTL   TL P+PV SSSSRG  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPV-SSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like3.6e-4098.94Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1I675 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial5.8e-3897.87Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASVCRSLL AAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIA SLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein5.7e-0638.96Show/hide
Query:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        ++T  H++  P P+ SSS    + SRI  S      L+   S++PLHSA+ASARL S ++V+S  W  + +G + PL
Subjt:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT1G55205.2 unknown protein1.4e-0438.89Show/hide
Query:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEG
        ++T  H++  P P+ SSS    + SRI  S      L+   S++PLHSA+ASARL S ++V+S  W  + +G
Subjt:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEG

AT3G13674.1 unknown protein4.9e-0535.71Show/hide
Query:  AHVTLKPVPVSSSSRGFISVSRIASSL---ASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        A+V+  P P+ S+S    +  R+  S      + S++PLHSA+AS+RL S ++V+S  W  + +G + PL
Subjt:  AHVTLKPVPVSSSSRGFISVSRIASSL---ASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.1 unknown protein7.2e-1752Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS CRS L A    GSR++  R+RT+    + LKP     P +S S+     SR+ S+L SV++++PLHSAVASARL+S IA DS CWS LS+G ATPL
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.2 unknown protein2.0e-1448.48Show/hide
Query:  MASVCRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP
        MAS CRS L A    GSR++  R+RT+    + LKP     P +S S+     SR+ S+L SV++++PLHSAVASARL+S IA DS CWS LS+    P
Subjt:  MASVCRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTGCCGATCACTTCTAGCGGCGGCGGCGGCGGGGGGTTCGAGGTCTATGGCCGGCCGTACCAGAACACTGGCTCATGTAACCCTAAAACCAGTGCCTGT
TTCTTCTTCCTCCAGGGGCTTCATTTCCGTTTCCAGGATTGCTTCATCTTTGGCTTCTGTGGACTCTCTGATGCCACTCCACAGTGCCGTCGCCTCAGCTCGGCTTAAAT
CCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCTACGCCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
CTCCATTTGAAGATCAGAAATGGCTTCCGTTTGCCGATCACTTCTAGCGGCGGCGGCGGCGGGGGGTTCGAGGTCTATGGCCGGCCGTACCAGAACACTGGCTCATGTAA
CCCTAAAACCAGTGCCTGTTTCTTCTTCCTCCAGGGGCTTCATTTCCGTTTCCAGGATTGCTTCATCTTTGGCTTCTGTGGACTCTCTGATGCCACTCCACAGTGCCGTC
GCCTCAGCTCGGCTTAAATCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCTACGCCTTTGTGACATAACAGTCGGTGAAGACAAATTGT
AATTGATAAAACAGCTTAGTGACTGGTAGCTGAAACGACCTTCCGTAGGACTTGCAAGGTTTTTCATCTTTTCAACTTATCTTTGCAAGATACCTTTATCACATGAAAGA
ATCATTTAGACAATTGTTGTTTAGTTTTGATCATTGTATAATGCAATGCGGCCACATTTTCTGGATATGCAGAGAGCTATTGTTTTGAGCCTCTGACCACAACCCCCGAG
AGATTGGATTTTCGTTAGGCGACTCTTTGTTGCTCTTGACTTTGTTCAATACCATGCAATTGATTTTCTCTATTCTAAGTATGGGGTCTTGGGCTGATGTCCAATACTTT
TACTACGTTCTGCTGAATTGAAACTTCATAATTCTGTTGTAACTGATTAGATTATCATTTTTCAGGCGTTCTTTATCCTTTAACGTTTGTTAGATTAGGATATATAGGGT
GCTAAGATTAGA
Protein sequenceShow/hide protein sequence
MASVCRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL