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Carg19455 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19455
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like
Genome locationCarg_Chr16:10045985..10046365
RNA-Seq ExpressionCarg19455
SyntenyCarg19455
Gene Ontology termsNA
InterPro domainsIPR011057 - Mss4-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146165.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]2.4e-6289.68Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY C ECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQR RTK+KCNSC  LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIK LRI+SES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
XP_022923554.1 uncharacterized protein LOC111431209 [Cucurbita moschata]4.6e-69100Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIKELRISSES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
XP_022965337.1 uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]3.3e-6798.41Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY CAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQR RTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIKELRISSES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
XP_023551931.1 uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]6.6e-6898.41Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQR RTKIKCNSCARLVGYVYDDGPPLT+SPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIKELRISSES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
XP_038903300.1 uncharacterized protein LOC120089928 [Benincasa hispida]4.9e-6391.27Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY C ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFETVNYWGIQR RTK+KCNSC  LVGY+YDDGPPLTDSPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIK LRI+SES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
TrEMBL top hitse value%identityAlignment
A0A0A0L4W0 Uncharacterized protein1.2e-6289.68Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY C ECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQR RTK+KCNSC  LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIK LRI+SES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
A0A1S3BJW2 uncharacterized protein LOC1034906675.9e-6288.1Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY C+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET+NYWGIQR RTK+KC SC  LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIK LRI+SE+
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
A0A6J0ZK38 uncharacterized protein At4g08330, chloroplastic8.5e-6184.92Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIYCC ECG NLNL+++HLFPPDFYFEAGNKGTLSF+LID+TKF+LEKEDK+RPFFETV+YWGIQR RTKIKCNSC +LVGYVYDDGPPLT+ PGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFK K LRI+SE+
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
A0A6J1E6R2 uncharacterized protein LOC1114312092.2e-69100Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIKELRISSES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
A0A6J1HK24 uncharacterized protein LOC111465232 isoform X21.6e-6798.41Show/hide
Query:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
        MASIY CAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQR RTKIKCNSCARLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQVIPRAPRYRFKIKELRISSES
        FGPSQVIPRAPRYRFKIKELRISSES
Subjt:  FGPSQVIPRAPRYRFKIKELRISSES
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17705.1 unknown protein7.6e-5472Show/hide
Query:  ASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHF
        ++IY C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFR EKEDK+ PFFET+NYWGIQR RTKIKC SC  L+GY+YDDGPPLT   GQY F
Subjt:  ASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHF

Query:  GPSQVIPRAPRYRFKIKELRISSES
        GPSQVIPRAPRYRFK K +++SS++
Subjt:  GPSQVIPRAPRYRFKIKELRISSES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTATTGTTGTGCAGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTC
GTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGGCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAATCGCACCAAGATCA
AGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGCCAGGTTATTCCCCGAGCT
CCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTATTGTTGTGCAGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTC
GTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGGCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAATCGCACCAAGATCA
AGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGCCAGGTTATTCCCCGAGCT
CCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA
Protein sequenceShow/hide protein sequence
MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRA
PRYRFKIKELRISSES