; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19461 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19461
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr16:10015159..10015587
RNA-Seq ExpressionCarg19461
SyntenyCarg19461
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]1.1e-5575.17Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPT-LKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK----DKDEGIGTSVLPCSHEFHKICLD
        MVFNK+FFFFYNN IGFR+ PT  KQATPLP   +SSLRP   DDC + ALSS EKALEGETCCVCLS MGN     DK  G GTSVLPC HEFHK+C++
Subjt:  MVFNKLFFFFYNNLIGFRTSPT-LKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK----DKDEGIGTSVLPCSHEFHKICLD

Query:  RWFEECRRTCPICRYSME-GGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        RWFEECRRTCPICRYSME GGG +HED +N++LTDEMVIWFSSFHTSGF
Subjt:  RWFEECRRTCPICRYSME-GGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

KAE8649999.1 hypothetical protein Csa_010276, partial [Cucumis sativus]1.0e-5677.86Show/hide
Query:  LFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWFEECRR
        +FFFFYNNLIGFR+ P  KQATPLPRS +SSLRP   DDC + ALSS EKALEGETCCVCLS MGN D+  D+G+GTSVLPC HEFHK+C++RWFEECRR
Subjt:  LFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWFEECRR

Query:  TCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        TCPICRYSMEGGG +HED +N++LTDEMVIWFSSFHTSGF
Subjt:  TCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]9.4e-7999.3Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC
        MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRP TPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC
Subjt:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC

Query:  RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
Subjt:  RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-79100Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC
        MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC
Subjt:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC

Query:  RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
Subjt:  RRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]8.3e-5976.87Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK--DKDEGIG--TSVLPCSHEFHKICLDR
        MVFNK+FFFFYNN +GFR+    KQATPLP   + SLRP TPDDC +  LSSPEKALEGETCCVCLS MGNK  D+D+G+G  TSVLPC HEFHK+C+DR
Subjt:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK--DKDEGIG--TSVLPCSHEFHKICLDR

Query:  WFEECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        WFEECRRTCPICRYSMEGGG +HEDG+N++LTDEMVIWFSSFHTSGF
Subjt:  WFEECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein8.1e-6077.93Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWF
        M+FNK+FFFFYNNLIGFR+ P  KQATPLPRS +SSLRP   DDC + ALSS EKALEGETCCVCLS MGN D+  D+G+GTSVLPC HEFHK+C++RWF
Subjt:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWF

Query:  EECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        EECRRTCPICRYSMEGGG +HED +N++LTDEMVIWFSSFHTSGF
Subjt:  EECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF135.4e-5675.17Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPT-LKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK----DKDEGIGTSVLPCSHEFHKICLD
        MVFNK+FFFFYNN IGFR+ PT  KQATPLP   +SSLRP   DDC + ALSS EKALEGETCCVCLS MGN     DK  G GTSVLPC HEFHK+C++
Subjt:  MVFNKLFFFFYNNLIGFRTSPT-LKQATPLPRSADSSLRPTTPDDC-VAALSSPEKALEGETCCVCLSCMGNK----DKDEGIGTSVLPCSHEFHKICLD

Query:  RWFEECRRTCPICRYSME-GGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        RWFEECRRTCPICRYSME GGG +HED +N++LTDEMVIWFSSFHTSGF
Subjt:  RWFEECRRTCPICRYSME-GGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

A0A6A1UIA7 Protein preY, mitochondrial3.9e-2248.15Show/hide
Query:  LIGFRTSPTLKQATPLPRSADS--SLRPTTPDDCVAA---LSSPEKALEGE-TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPIC
        LIG R  P LK+A     S  +   L     D  ++A    SS  +  EGE  CCVCLS +      +G  T +LPC HEFHK+C+DRWF  CR+TCP+C
Subjt:  LIGFRTSPTLKQATPLPRSADS--SLRPTTPDDCVAA---LSSPEKALEGE-TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPIC

Query:  RYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        R+SM G  N       E LTDEMVIWFSSFH +GF
Subjt:  RYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like2.6e-4266.22Show/hide
Query:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPD-----DCVAALSSPEKALEGE-TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLD
        MVFN++FFFFY N IGFR  P LKQ T LP   DS+LR    D     DCV  LSS  KALEGE  CCVCLS +     +EGI TSVLPC HEFHK+C+D
Subjt:  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPD-----DCVAALSSPEKALEGE-TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLD

Query:  RWFEECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        RWFEE RRTCPICRYSMEG G  +E+G+ ++LTDEMVIWFSSFHTSGF
Subjt:  RWFEECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

A0A7N2R4T7 RING-type domain-containing protein9.3e-2448.3Show/hide
Query:  MVFNKLFFFFYNNLIG----FRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRW
        MVF KL  F YN+LIG     R  PT  +A  L       L   + D+ V      E  +EGE CCVCLS +  K ++E      LPC HEFHKIC+DRW
Subjt:  MVFNKLFFFFYNNLIG----FRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRW

Query:  FEE-CRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF
        F   CR+TCP+CR+SM G    H   + ++LTDEMVIWFSSFH +GF
Subjt:  FEE-CRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

SwissProt top hitse value%identityAlignment
Q4R6Y5 E3 ubiquitin-protein ligase ZNRF42.0e-0734.72Show/hide
Query:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC-RRTCPICRYSMEGGGNNHEDGSNEMLTDE
        + C +CL      + +EG    +LPCSH +H  C+D WF +  RR+CP+C+ S+ G  ++  D + +  +DE
Subjt:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC-RRTCPICRYSMEGGGNNHEDGSNEMLTDE

Q5XIL0 E3 ubiquitin-protein ligase RNF1672.0e-0732.84Show/hide
Query:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHE
        +K  E + C +CL      + ++G    +LPC+H +H  C+D W  + R+TCPIC+  +  G  + E
Subjt:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHE

Q91XF4 E3 ubiquitin-protein ligase RNF1671.5e-0734.33Show/hide
Query:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHE
        +K  E + C +CL      + ++G    VLPC+H +H  C+D W  + R+TCPIC+  +  G  + E
Subjt:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHE

Q9NVW2 E3 ubiquitin-protein ligase RLIM2.6e-0744.83Show/hide
Query:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN
        +TC VC++     +  EG     LPCSHE+H  C+DRW  E   TCPICR ++   GN
Subjt:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN

Q9WTV7 E3 ubiquitin-protein ligase RLIM2.6e-0744.83Show/hide
Query:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN
        +TC VC++     +  EG     LPCSHE+H  C+DRW  E   TCPICR ++   GN
Subjt:  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein7.1e-0842.86Show/hide
Query:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICR
        E+  +G  CCVCL   G K+++E   + ++ C H FH+ CLD WF     TCP+CR
Subjt:  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICR

AT1G35630.1 Protease-associated (PA) RING/U-box zinc finger family protein2.4e-0831.82Show/hide
Query:  EKALEGETCCVCLS--CMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN
        E++    TC +C+   C+G K         +LPC H++H +C+D W   CR  CP+C+ +   G +
Subjt:  EKALEGETCCVCLS--CMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGN

AT3G51325.1 RING/U-box superfamily protein1.9e-1344.58Show/hide
Query:  EGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRR-TCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFH
        E E C VCL  M  KD  +      LPCSHEFH +C+D WF   R+  CP+CR+S           +  +LTDE+++WFSSFH
Subjt:  EGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRR-TCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFH

AT4G32600.1 RING/U-box superfamily protein1.9e-0835.45Show/hide
Query:  PTLKQATPLPRS-ADSSLRPTTPDDCVAALSSPEKALEGE--TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNN
        PT K      RS  D +   T+    VAA +  E+A+ GE   CC+CL+   N ++        LPCSH FHK C+D+W  +   +CP+C+   E G  N
Subjt:  PTLKQATPLPRS-ADSSLRPTTPDDCVAALSSPEKALEGE--TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNN

Query:  HEDGSNEMLT
         +  S  +LT
Subjt:  HEDGSNEMLT

AT5G45290.1 RING/U-box superfamily protein3.2e-0846.67Show/hide
Query:  CLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICR
        C  C+   ++ + I T  LPC HEFHK C+D+W +E  R CP+CR
Subjt:  CLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGCAACCCCGCTTCCTCGTAGTGCCGATTCGAGCCT
TCGACCTACGACACCTGATGATTGTGTCGCAGCTCTTTCGAGCCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGAAACAAGGACAAAG
ACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCGCACGAGTTTCATAAGATATGTCTCGATCGATGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCA
ATGGAAGGAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGCAACCCCGCTTCCTCGTAGTGCCGATTCGAGCCT
TCGACCTACGACACCTGATGATTGTGTCGCAGCTCTTTCGAGCCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGAAACAAGGACAAAG
ACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCGCACGAGTTTCATAAGATATGTCTCGATCGATGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCA
ATGGAAGGAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
Protein sequenceShow/hide protein sequence
MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYS
MEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF