; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19474 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19474
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncold shock domain-containing protein 3-like
Genome locationCarg_Chr16:9932938..9933729
RNA-Seq ExpressionCarg19474
SyntenyCarg19474
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577777.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-142100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]5.4e-12892.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGG

Query:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGAGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGG GGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGAGGGACYNCGGFGHLARDCNRG

Query:  GAGGGS--GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----GGGGANTCFNCGKSGHFARECPD
        GAGGGS  GGGGGGCFNCGEYGH+ARDCQNESRGSGGGGGGRF     GGGG+NTCFNCGKSGHFARECPD
Subjt:  GAGGGS--GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----GGGGANTCFNCGKSGHFARECPD

XP_022923189.1 cold shock domain-containing protein 3-like [Cucurbita moschata]4.4e-13897.74Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGS   GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

XP_022965328.1 cold shock domain-containing protein 3-like [Cucurbita maxima]6.3e-13798.48Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGS
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGAGGGACYNCGGFGHLARDCNRGGAGGGS
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGGGG CFNCGEYGHLARDCQNESRGS GGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

XP_023551806.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]2.2e-13798.12Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG-GGGGGGCFTCGEVGHLARDCPRGNS--GGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG GGGGGGCFTCGEVGHLARDCPRGNS  GGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG-GGGGGGCFTCGEVGHLARDCPRGNS--GGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGS  GGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein2.6e-12892.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGG

Query:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGAGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGG GGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS----GGGGAGGGACYNCGGFGHLARDCNRG

Query:  GAGGGS--GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----GGGGANTCFNCGKSGHFARECPD
        GAGGGS  GGGGGGCFNCGEYGH+ARDCQNESRGSGGGGGGRF     GGGG+NTCFNCGKSGHFARECPD
Subjt:  GAGGGS--GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----GGGGANTCFNCGKSGHFARECPD

A0A5D3CJR2 Cold shock domain-containing protein 33.2e-12692.22Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNS   GGGG+GGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGSGGGGG--GRFGGGGANTCFNCGKSGHFARECPD
        NRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGSGGGGG  G  GGGG+NTCFNCGKSGHFARECPD
Subjt:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGSGGGGG--GRFGGGGANTCFNCGKSGHFARECPD

A0A6J1E5N5 cold shock domain-containing protein 3-like2.1e-13897.74Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGS   GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

A0A6J1GAE9 cold shock protein 1-like2.2e-12794.64Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNS--GGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS  GGGGAGGG CYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNS--GGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGG-GRFGGGGANTCFNCGKSGHFARECPD
        GSGGGGGGCFNCGEYGHLARDCQNESR SGGGG  G  GGGGANTCFNCGKSGHFARECPD
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGG-GRFGGGGANTCFNCGKSGHFARECPD

A0A6J1HNK3 cold shock domain-containing protein 3-like3.1e-13798.48Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGS
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGAGGGACYNCGGFGHLARDCNRGGAGGGS
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGGGG CFNCGEYGHLARDCQNESRGS GGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 11.8e-4949.49Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----

Query:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGG------AGGGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G        G   CY CG 
Subjt:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGG------AGGGACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV
         GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G    GG G            GGG  N C+ CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV

P27484 Glycine-rich protein 24.1e-3849.62Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++  G R    GGGGG GGRGGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGA
        G G G GG+ GG  R GS G GGG     G  G            GGGG GGG               R   GGGG GGG                 GG 
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF----GGGGANTCFNCGKSGHFAREC
        GGG  GGG GCF CGE GH ARDC   S+  GGGGGGRF    GGGG   C+ CG+ GHFAREC
Subjt:  GGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF----GGGGANTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 48.0e-3448.61Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGRGG GGG G GG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGG
         RGG    GS G G GG                +  RGGGGG   CF CGE GH+AR+C +G  G  G GGG  Y  GG             GGG GGGG
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGG

Query:  GGCFNCGEYGHLARDC
          C++CGE GH ARDC
Subjt:  GGCFNCGEYGHLARDC

Q41188 Cold shock protein 24.0e-3346.9Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+        G  GGRGG GGG     G G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGG

Query:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGG
         G+GG  GG    G  G GG  CY+CGE GH+ARDC+      GGGG GG                   GGGG GGG  Y  GG G+       GG G G
Subjt:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGCFNCGEYGHLARDCQNESR
         GGGGG C++CGE GH ARDC +  R
Subjt:  SGGGGGGCFNCGEYGHLARDCQNESR

Q94C69 Cold shock domain-containing protein 31.2e-5351.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----

Query:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGGG--------GAGGGACYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG         G+GG  CY CG
Subjt:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGGG--------GAGGGACYNCG

Query:  GFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV
        G GH ARDC + G GG  GGGG  C+ CG  GH+A+ C ++   SGGGGGGR                        GGGG+N CF CGK GHFAREC  V
Subjt:  GFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 38.4e-5551.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----

Query:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGGG--------GAGGGACYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG         G+GG  CY CG
Subjt:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGGG--------GAGGGACYNCG

Query:  GFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV
        G GH ARDC + G GG  GGGG  C+ CG  GH+A+ C ++   SGGGGGGR                        GGGG+N CF CGK GHFAREC  V
Subjt:  GFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV

AT2G21060.1 glycine-rich protein 2B5.7e-3548.61Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGRGG GGG G GG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGG
         RGG    GS G G GG                +  RGGGGG   CF CGE GH+AR+C +G  G  G GGG  Y  GG             GGG GGGG
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGG

Query:  GGCFNCGEYGHLARDC
          C++CGE GH ARDC
Subjt:  GGCFNCGEYGHLARDC

AT4G36020.1 cold shock domain protein 11.3e-5049.49Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----

Query:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGG------AGGGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G        G   CY CG 
Subjt:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGG------AGGGACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV
         GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G    GG G            GGG  N C+ CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV

AT4G38680.1 glycine rich protein 22.8e-3446.9Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+        G  GGRGG GGG     G G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGG

Query:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGG
         G+GG  GG    G  G GG  CY+CGE GH+ARDC+      GGGG GG                   GGGG GGG  Y  GG G+       GG G G
Subjt:  YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGCFNCGEYGHLARDCQNESR
         GGGGG C++CGE GH ARDC +  R
Subjt:  SGGGGGGCFNCGEYGHLARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTGGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGT
AATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGCGGCGGTGGTGGTGGTGG
TGGTTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGTGCAGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTG
GGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAG
AATGAAAGTCGTGGCAGCGGAGGCGGGGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGA
TGTAAGGAGTGAGACAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTGGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGT
AATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGCGGCGGTGGTGGTGGTGG
TGGTTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGTGCAGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTG
GGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAG
AATGAAAGTCGTGGCAGCGGAGGCGGGGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGA
TGTAAGGAGTGAGACAGAGTAA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRR
NGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQ
NESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE