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Carg19493 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19493
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCotton fiber protein
Genome locationCarg_Chr16:9793065..9793457
RNA-Seq ExpressionCarg19493
SyntenyCarg19493
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052985.1 hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa]4.3e-3062.4Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLE
        MAE  +P+  R+KKAL KLTA VRLC V R  S+R+ SFDSD R  G+R +L D+S I E    RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LE
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLE

Query:  RQISLKLRYYGINSSEIDYEARSPP
        RQISL+LRYY +NS E +YE  SPP
Subjt:  RQISLKLRYYGINSSEIDYEARSPP

KAG6577759.1 hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia]2.3e-6399.23Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
        MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER

Query:  QISLKLRYYGINSSEIDYEARSPPFSSSIR
        QISLKL YYGINSSEIDYEARSPPFSSSIR
Subjt:  QISLKLRYYGINSSEIDYEARSPPFSSSIR

KAG6596691.1 hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia]6.7e-3161.42Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
        MA+  +P++ R+KK+  KLTAF+RLC   R  SRR+RSF SD RTAGLRS L DE IVE  SVRKLER  S+   + EDDVD+R+QIFID F RQL LER
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER

Query:  QISLKLRYYGINSSEIDYEARSPPFSS
        QISL+LRY  +NSSE + E +SPP+ S
Subjt:  QISLKLRYYGINSSEIDYEARSPPFSS

KAG7015798.1 hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-64100Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
        MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER

Query:  QISLKLRYYGINSSEIDYEARSPPFSSSIR
        QISLKLRYYGINSSEIDYEARSPPFSSSIR
Subjt:  QISLKLRYYGINSSEIDYEARSPPFSSSIR

XP_022145292.1 uncharacterized protein LOC111014780 [Momordica charantia]4.8e-2959.38Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQL
        MAE  +P++ R+KKA+ K+TA +R    LC   R PS R+RSF    RT GLRS L DE I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L
Subjt:  MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQL

Query:  MLERQISLKLRYYGINSSEIDYEARSPP
         LERQISL+LRYY INSS  + E RSPP
Subjt:  MLERQISLKLRYYGINSSEIDYEARSPP

TrEMBL top hitse value%identityAlignment
A0A0A0L4Z8 Uncharacterized protein7.5e-2860Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLML
        MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDS D +  G+R +L D+S I E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL L
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLML

Query:  ERQISLKLRYYGINSSEIDYEARSP
        ERQISL+LRYY +NS E +YE RSP
Subjt:  ERQISLKLRYYGINSSEIDYEARSP

A0A0A0L6A3 Uncharacterized protein2.1e-1451.64Show/hide
Query:  VVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSC---EDDVDQRAQIFIDNFRRQLMLERQISL
        + LR+++ L KL AF+RLC + R   RR     S  RT   R++L D+      + R LER  SSR  SC   EDDVD RA+IFI+NFRRQL LERQISL
Subjt:  VVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSC---EDDVDQRAQIFIDNFRRQLMLERQISL

Query:  KLRYYGI--NSSEIDYEARSPP
        +LR YG+  NS E DYE   PP
Subjt:  KLRYYGI--NSSEIDYEARSPP

A0A2C9UBN9 Uncharacterized protein4.9e-1144.07Show/hide
Query:  VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER
        V+  +K+A+ KL   +       R+  + R  SRR R    + R  GL   + D    E   VR L+R   +R+ + EDD+DQRA+IFI+NFRRQL+LER
Subjt:  VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLER

Query:  QISLKLRYYGINSSEIDY
        QISL+LRYY  NS   DY
Subjt:  QISLKLRYYGINSSEIDY

A0A5D3CHZ5 Uncharacterized protein2.1e-3062.4Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLE
        MAE  +P+  R+KKAL KLTA VRLC V R  S+R+ SFDSD R  G+R +L D+S I E    RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LE
Subjt:  MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLE

Query:  RQISLKLRYYGINSSEIDYEARSPP
        RQISL+LRYY +NS E +YE  SPP
Subjt:  RQISLKLRYYGINSSEIDYEARSPP

A0A6J1CW64 uncharacterized protein LOC1110147802.3e-2959.38Show/hide
Query:  MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQL
        MAE  +P++ R+KKA+ K+TA +R    LC   R PS R+RSF    RT GLRS L DE I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L
Subjt:  MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQL

Query:  MLERQISLKLRYYGINSSEIDYEARSPP
         LERQISL+LRYY INSS  + E RSPP
Subjt:  MLERQISLKLRYYGINSSEIDYEARSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G57510.1 unknown protein6.1e-0648.08Show/hide
Query:  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP
        S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Subjt:  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCG
ATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGA
ATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGC
ATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCG
ATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGA
ATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGC
ATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA
Protein sequenceShow/hide protein sequence
MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYG
INSSEIDYEARSPPFSSSIR