; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19495 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19495
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal L28 family
Genome locationCarg_Chr16:9786376..9789580
RNA-Seq ExpressionCarg19495
SyntenyCarg19495
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577758.1 hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sororia]4.2e-5097.14Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

KAG7015796.1 MRPL24 [Cucurbita argyrosperma subsp. argyrosperma]4.4e-55100Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRGLMSILD
        ITSRGLMSILD
Subjt:  ITSRGLMSILD

XP_022923524.1 uncharacterized protein LOC111431195 [Cucurbita moschata]4.2e-5097.14Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

XP_022965371.1 uncharacterized protein LOC111465250 [Cucurbita maxima]2.7e-4994.29Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+SEDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

XP_023553194.1 uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]2.7e-4996.19Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQ KRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

TrEMBL top hitse value%identityAlignment
A0A0A0L1P8 Uncharacterized protein3.3e-4892.38Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

A0A6A3D064 Pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein8.0e-4788.57Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKK++KKVGENNLAPGVK+ LKKCIPDSK+VMNRAKRG++AGRHIQFGN ISEDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

A0A6J1CUG4 uncharacterized protein LOC1110148721.2e-4791.43Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+SEDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

A0A6J1E6M9 uncharacterized protein LOC1114311952.0e-5097.14Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

A0A6J1HLI0 uncharacterized protein LOC1114652501.3e-4994.29Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+SEDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG

SwissProt top hitse value%identityAlignment
A0L5U1 50S ribosomal protein L287.3e-0536.51Show/hide
Query:  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG
        A++    G+  Q GN++S     K+RR W PN+Q K L+S  L + ++V ++T ALR + + G
Subjt:  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG

B2FNE3 50S ribosomal protein L285.6e-0537.1Show/hide
Query:  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSIL
        +G+ +Q GN +S    NK+RR + PN+ E+R +    +R ++++V+ HALR I   G+ S+L
Subjt:  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSIL

B4SNN0 50S ribosomal protein L285.6e-0537.1Show/hide
Query:  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSIL
        +G+ +Q GN +S    NK+RR + PN+ E+R +    +R ++++V+ HALR I   G+ S+L
Subjt:  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSIL

B6IW31 50S ribosomal protein L281.9e-0542.86Show/hide
Query:  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG
        G+ +Q GN +S    NKSRR W PN+QE  L S  L R +R++++T+ +R I  +G
Subjt:  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG

P36525 54S ribosomal protein L24, mitochondrial9.2e-0837.5Show/hide
Query:  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG
        +K  PD K     +  ++ +G++ G  +QFGN ISE    K+R+ W PNV +K L+S  L+R I +K+T   L+ I+  G
Subjt:  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG

Arabidopsis top hitse value%identityAlignment
AT4G31460.1 Ribosomal L28 family1.1e-4375.24Show/hide
Query:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC
        MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VM RAKRG++AGRHIQ+GNR+SEDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRC
Subjt:  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRC

Query:  ITSRG
        I   G
Subjt:  ITSRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAA
AATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAA
ATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTT
GACTGA
mRNA sequenceShow/hide mRNA sequence
AAACCCTAATTTACCGCCACGCCTTTCCTTCCCATTACTAGCCACTGTATCCCGACTCTCCCCACGCCGCTGACCTCTTCTGCCTGACGCCATCTCAACGGCTGCCGCCG
CACGTTGCAGTCTCAGCCTCCCGGCGATCTCACCGCCGCTCCCTCCGTTTCACAGTCTTTCGCCTCACCGAGTGATAACAGAGCAACGGACTGTAACAACGCAAATTGCT
TATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGCTTGTTGGCA
GTAATTCAAACTCATTTTCGCAGATCGTTCTACTTCTGTTCCTATTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAGAGTCGAAAATGGCCTTTAGAGGA
AAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAG
GGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGC
GACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA
Protein sequenceShow/hide protein sequence
MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSIL
D