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Carg19501 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19501
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionACT domain-containing protein
Genome locationCarg_Chr03:3864775..3865701
RNA-Seq ExpressionCarg19501
SyntenyCarg19501
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595565.1 hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3564.47Show/hide
Query:  QEEKPNASGGAWAASGGDAA-------AREEWTAAAAAVAG--KWTGFD----HVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADV
        + +K  ASGGAW ASGGD A       +RE   AAA++     K T FD       VVNVE+L RGFLINV+ E+NSPGLLV+ILEAFEKLGLEVLDA+V
Subjt:  QEEKPNASGGAWAASGGDAA-------AREEWTAAAAAVAG--KWTGFD----HVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADV

Query:  SCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ
        SCSDCFQLQAVGEE         NE TKI+K QVVK AVKQAIKEWSESNGQ
Subjt:  SCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ

KAG7033733.1 hypothetical protein SDJN02_03458, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-78100Show/hide
Query:  MFNINKEELVVYFLLRSQEEKPNASGGAWAASGGDAAAREEWTAAAAAVAGKWTGFDHVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVL
        MFNINKEELVVYFLLRSQEEKPNASGGAWAASGGDAAAREEWTAAAAAVAGKWTGFDHVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVL
Subjt:  MFNINKEELVVYFLLRSQEEKPNASGGAWAASGGDAAAREEWTAAAAAVAGKWTGFDHVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVL

Query:  DADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        DADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  DADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

XP_022950375.1 uncharacterized protein LOC111453491 [Cucurbita moschata]4.4e-3790.72Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEE         NEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

XP_022977370.1 uncharacterized protein LOC111477723 [Cucurbita maxima]4.9e-3688.66Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        VVNVE+LERGFLINVFSERNSPGLLV+ILEAFEKLGLEVLDADVSCSDCFQLQAVGEE         NEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

XP_038882922.1 uncharacterized protein LOC120074022 [Benincasa hispida]2.1e-3485.57Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        +VNVE+LERGFLINVF ERNSPGLLV+ILEAFEKLGLEVLDA+VSCSDCFQLQAVGEE         NEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

TrEMBL top hitse value%identityAlignment
A0A0A0L039 Uncharacterized protein4.6e-3281.25Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ
        VVNVE++ERGFLINVF ERNSPGLLV+ILEAFEKLGL VLDAD+SCSDCFQLQA GEE         NEG KIIKAQVVKNAVKQAIKEWSES+GQ
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ

A0A1S3CLI8 uncharacterized protein LOC1035021844.2e-3382.47Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        VVNVE++ERGFLINVF ERNSPGLLV+ILEAFEKLGL VLDAD+SCSDCFQLQAVGEE         NEG KIIKAQVVKNAVKQAIKEWSES+GQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

A0A6J1GFJ5 uncharacterized protein LOC1114534912.1e-3790.72Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEE         NEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

A0A6J1HSD7 uncharacterized protein LOC1114661691.5e-3057.23Show/hide
Query:  YFLLRSQEEKPNAS-----GGAWAA---SGGDAAAREEWTAAAAAVAG--KWTGFD----HVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGL
        +F    ++EK + S      G W      G +  +RE   AAA++     K T FD       VVNVE+L RGFLINV+ E+NSPGLLV+ILEAFEKLGL
Subjt:  YFLLRSQEEKPNAS-----GGAWAA---SGGDAAAREEWTAAAAAVAG--KWTGFD----HVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGL

Query:  EVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ
        EVLDA+VSCSDCFQLQAVGEE         NE TK++K QVVK AVKQAIKEWSESNGQ
Subjt:  EVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQ

A0A6J1IM47 uncharacterized protein LOC1114777232.4e-3688.66Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA
        VVNVE+LERGFLINVFSERNSPGLLV+ILEAFEKLGLEVLDADVSCSDCFQLQAVGEE         NEGTKIIKAQVVKNAVKQAIKEWSESNGQA
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein2.8e-0535.71Show/hide
Query:  QVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAV
        Q V VE +   F + + S R     LV ILEAFE++GL V  A  SC D F ++A+        L S ++ T+ +   +VK +V
Subjt:  QVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAV

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)3.8e-1848.94Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESN
        +V VE L++GF+INVFS +N PG+LV +LEAFE +GL VL+A  SC+D F L A+G E         NE  + + A+ VK AV  AI+ W E N
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESN

AT3G56220.1 transcription regulators4.2e-1746.81Show/hide
Query:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESN
        +V VE LE+GF+I V S +N  G+LV +LE FE LGL+V++A VSC+D F L A+G         S N+    I A+ VK AV +AI+ WS+S+
Subjt:  VVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCFQLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATATAAATAAAGAGGAACTGGTGGTCTACTTTCTTTTAAGATCCCAGGAAGAGAAACCAAACGCCTCTGGTGGCGCGTGGGCGGCGAGTGGAGGAGACGCGGC
GGCCCGTGAAGAGTGGACGGCGGCGGCGGCGGCGGTGGCTGGGAAATGGACGGGATTTGATCATGTGCAGGTGGTGAACGTGGAGAATTTGGAGAGGGGATTTCTAATAA
ACGTGTTTTCAGAAAGGAATTCACCGGGATTATTGGTTCAGATTCTAGAAGCCTTTGAAAAACTAGGACTTGAAGTTCTCGACGCAGACGTGTCTTGTTCGGATTGTTTC
CAACTTCAAGCTGTTGGAGAAGAGGTCGGTTTAGTCTCTCTAATATCACGGAATGAAGGCACCAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTGAAGCAAGCAAT
CAAGGAATGGAGTGAAAGTAATGGGCAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATATAAATAAAGAGGAACTGGTGGTCTACTTTCTTTTAAGATCCCAGGAAGAGAAACCAAACGCCTCTGGTGGCGCGTGGGCGGCGAGTGGAGGAGACGCGGC
GGCCCGTGAAGAGTGGACGGCGGCGGCGGCGGCGGTGGCTGGGAAATGGACGGGATTTGATCATGTGCAGGTGGTGAACGTGGAGAATTTGGAGAGGGGATTTCTAATAA
ACGTGTTTTCAGAAAGGAATTCACCGGGATTATTGGTTCAGATTCTAGAAGCCTTTGAAAAACTAGGACTTGAAGTTCTCGACGCAGACGTGTCTTGTTCGGATTGTTTC
CAACTTCAAGCTGTTGGAGAAGAGGTCGGTTTAGTCTCTCTAATATCACGGAATGAAGGCACCAAAATCATAAAGGCCCAAGTGGTGAAAAATGCAGTGAAGCAAGCAAT
CAAGGAATGGAGTGAAAGTAATGGGCAAGCATAA
Protein sequenceShow/hide protein sequence
MFNINKEELVVYFLLRSQEEKPNASGGAWAASGGDAAAREEWTAAAAAVAGKWTGFDHVQVVNVENLERGFLINVFSERNSPGLLVQILEAFEKLGLEVLDADVSCSDCF
QLQAVGEEVGLVSLISRNEGTKIIKAQVVKNAVKQAIKEWSESNGQA