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Carg19655 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19655
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr14:11987061..11989573
RNA-Seq ExpressionCarg19655
SyntenyCarg19655
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582205.1 hypothetical protein SDJN03_22207, partial [Cucurbita argyrosperma subsp. sororia]3.0e-5193.33Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSV---AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHE
        MN ESKRNNPNPLMVKPESEDRRASSV   AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKK+FDQRHGPTWHCIVGR   SYVTHE
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSV---AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHE

Query:  SNHFVYFYLDQKAVLLFKSG
        SNHFVYFYLDQKAVLLFKSG
Subjt:  SNHFVYFYLDQKAVLLFKSG

KAG7018601.1 hypothetical protein SDJN02_20471 [Cucurbita argyrosperma subsp. argyrosperma]9.0e-56100Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVY
        MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVY
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVY

Query:  FYLDQKAVLLFKSG
        FYLDQKAVLLFKSG
Subjt:  FYLDQKAVLLFKSG

XP_022955505.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]2.5e-5093.22Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN
        MN ESKR+NPNPLMVKPESEDR+ASSV AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDQRHGPTWHCIVGR   SYVTHESN
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_022979977.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]1.8e-5194.02Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH
        MN ESKR+NPNPLMVKPESEDR+ASSVAAAAKKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESNH
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023526495.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]8.7e-5194.07Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVA-AAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN
        MN ESKR NPNPLMVKPESEDR+ASSVA AAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESN
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVA-AAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain1.7e-4481.2Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH
        MN ++KR NP  LMVKPESEDR+ SS    A+K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFD+RHGPTWHCIVGR   SYVTHE+NH
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1G0U9 Dynein light chain5.2e-4986.32Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH
        MNH+SKR+NP+PLMVKPESEDR+ SS A   KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHC++GR   SYVTHE+NH
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1GVA3 Dynein light chain1.2e-5093.22Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN
        MN ESKR+NPNPLMVKPESEDR+ASSV AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDQRHGPTWHCIVGR   SYVTHESN
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1IC60 Dynein light chain8.2e-4785.47Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH
        MNH+SKR+NP+ LMVKPESEDR+ SS A   KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHC++GR   SYVTHE+NH
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1IQ69 Dynein light chain8.5e-5294.02Show/hide
Query:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH
        MN ESKR+NPNPLMVKPESEDR+ASSVAAAAKKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESNH
Subjt:  MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic7.7e-2663.95Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   SYVTHE+ HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG

Q39580 Dynein 8 kDa light chain, flagellar outer arm2.7e-2662.64Show/hide
Query:  VAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG
        +A+ + K VIK+ADM  +MQ +AVD A  A EK+++EKD+A  IKKEFD++H PTWHCIVGR   SYVTHE+ HF+YFYL Q A+LLFKSG
Subjt:  VAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic7.7e-2665.12Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   SYVTHE+ HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic7.7e-2665.12Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   SYVTHE+ HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic7.7e-2665.12Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   SYVTHE+ HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein8.0e-1039.29Show/hide
Query:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKS
        ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG    SYVTH +  F+YF +D+  VLLFK+
Subjt:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.1e-0837.65Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDQRHGPTWHCIVGRS---YVTHESNHFVYFYLDQKAVLLFK
        K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG +   + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDQRHGPTWHCIVGRS---YVTHESNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein1.6e-3471.84Show/hide
Query:  EDRRAS-----SVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLF
        +DRR+S     +   A K+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEFD++HG TWHCIVGR   SYVTHE+NHFVYFYLDQKAVLLF
Subjt:  EDRRAS-----SVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLF

Query:  KSG
        KSG
Subjt:  KSG

AT4G27360.1 Dynein light chain type 1 family protein5.7e-0838.82Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFK
        K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W CIVG    S+VTH S  F++F +    +LLFK
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein3.8e-1243.88Show/hide
Query:  ASSVAAAAKKIVIK--SADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKS
        A+ + AAA+ + ++  +ADM G MQ  A   A   + + EK S  K +A  +KKEFD+ +GP WHCIVG    S+VTH +  F+YF +D+  VLLFK+
Subjt:  ASSVAAAAKKIVIK--SADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCACGAATCCAAGCGCAACAATCCCAATCCTCTAATGGTGAAGCCGGAATCTGAGGATCGCAGAGCCTCATCTGTGGCCGCCGCCGCCAAGAAAATCGTCATCAA
GAGCGCCGATATGTTCGGCGACATGCAGAAGGAGGCTGTTGACATTGCTATAGCCGCTTTTGAGAAGCATAGCGTCGAGAAGGATGTCGCCGAGCAGATAAAGAAGGAGT
TCGATCAGAGACATGGCCCTACCTGGCATTGCATCGTCGGTCGTTCTTATGTGACACACGAGTCGAACCATTTTGTTTACTTCTACCTGGACCAGAAAGCAGTTTTACTT
TTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
TCAACCTCTCTGTTCTTCTCTTACCCCTAGAACTCCACGGAAACATGAACCACGAATCCAAGCGCAACAATCCCAATCCTCTAATGGTGAAGCCGGAATCTGAGGATCGC
AGAGCCTCATCTGTGGCCGCCGCCGCCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGCGACATGCAGAAGGAGGCTGTTGACATTGCTATAGCCGCTTTTGAGAA
GCATAGCGTCGAGAAGGATGTCGCCGAGCAGATAAAGAAGGAGTTCGATCAGAGACATGGCCCTACCTGGCATTGCATCGTCGGTCGTTCTTATGTGACACACGAGTCGA
ACCATTTTGTTTACTTCTACCTGGACCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGGTTGATCTCCCCTTGACAACGATGCCACCGAGTAGTTTGGCGAGCCTGC
GACGATGGCGCTACAACTATTTCCTGTATGTATAATCTATTCTGCCAGTATATAAATCACTTGGTGTAGCATTTTATATATTATAACTGATATATCAGTGGGCAGTAAAT
TAAATGGTGAAACAAGAAATTCAATGTAAATGCATTTACATGATGTCTCAAAGGGGGTCTCTTTGGCGATGTCATTAAAACAGAATGCAGTTCAGAATCCGAGGCTCTAG
ATCCTACGTCGGGAAACAAAACATTCTTTATAAGGGTGTGAAAACTCTTCTCCAGCAGACGTGTTTTAAAACTGTG
Protein sequenceShow/hide protein sequence
MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVYFYLDQKAVLL
FKSG