CuGenDBv2

Gene ID	Carg19678
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	Carg_Chr16:1817783..1819224
RNA-Seq Expression	Carg19678
Synteny	Carg19678
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

1.7e-64

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K++IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

1.9e-63

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

3.2e-63

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

2.0e-68

100

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

1.0e-64

93.62

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK++IIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

8.3e-65

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K++IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

9.2e-64

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

9.2e-64

92.2

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

9.5e-69

100

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

9.5e-69

100

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Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.3e-38

63.7

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Query:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K KD++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

9.1e-40

63.7

Show/hide

Query:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K KD++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGC
TCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTA
AAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGAT
GACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAGGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAG

mRNA sequence

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CTACGGTTAGTGAAGAATTCTCAGTGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCT
TCTTCTTATCGAGTATGCTCTCCTTCCTCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTACTTGCTGTACGTTCTGTTTAGTTTCTT
TGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCC
AAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAA
TTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGA
AAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAGGACCAGTTAGACAA
ACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATC
AATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

Protein sequence

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MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKD
DIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Carg19678 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome