; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19680 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19680
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S29
Genome locationCarg_Chr16:1806009..1808735
RNA-Seq ExpressionCarg19680
SyntenyCarg19680
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR023676 - Ribosomal protein S14, type Z, archaeal
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3439238.1 hypothetical protein FNV43_RR17513 [Rhamnella rubrinervis]1.2e-2591.38Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDP
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  +P
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDP

KAG7014949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-103100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSI
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSI
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSI

Query:  PFLPTPFLSLPPLPLATLKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALTCSKNNTCTTIRRGS
        PFLPTPFLSLPPLPLATLKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALTCSKNNTCTTIRRGS
Subjt:  PFLPTPFLSLPPLPLATLKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALTCSKNNTCTTIRRGS

KAG7030949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2959.4Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSI
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKA                                             
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSI

Query:  PFLPTPFLSLPPLPLATLKEASSPLRAFSSSAM
          LP+  L LPP P+A+LKEASSPLRAFSSSAM
Subjt:  PFLPTPFLSLPPLPLATLKEASSPLRAFSSSAM

KGN52774.1 hypothetical protein Csa_014474 [Cucumis sativus]7.3e-2698.21Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

QCE08455.1 small subunit ribosomal protein S29e [Vigna unguiculata]8.6e-2784.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSP
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S P  S  ++ L SP
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSP

TrEMBL top hitse value%identityAlignment
A0A067KZM9 Uncharacterized protein1.0e-2596.43Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A0A0KV31 Uncharacterized protein3.5e-2698.21Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A2C9U073 Uncharacterized protein1.0e-2585.94Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDES
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK     + +ES
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDES

A0A4D6N8J1 Small subunit ribosomal protein S29e4.2e-2784.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSP
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S P  S  ++ L SP
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSP

F6HXU9 Uncharacterized protein1.0e-2596.43Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S291.3e-1770.37Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S291.9e-2488.89Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S292.9e-2592.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q6F473 40S ribosomal protein S292.9e-1768.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S292.0e-1868.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein2.0e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein2.0e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein2.0e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGACCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTAT
GTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGACCCGAGGCTCTCCGACGAATCCGAGCTGCTGTTTTCACCATACCCTCCTC
CTTTACTTGACCATAGCTTAGTGAAAAGCTTCTTTGACTTCAGCATGCCTTTCATCTTACTCAGAGCTGCTTTGTCAATACCATTTTTACCAACTCCATTCCTCTCACTA
CCTCCTCTACCATTAGCAACCCTTAAGGAAGCCAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGGCTACTGCATCCCAGTCTTCCTCAGGGTTCGTCGTGGCGGA
TCTTGAGCTGCCGTGTGACCCACTTGTTAGATCCTTGATCCCTTTAGGTAGGTCGGGAGTGCTGCTGCCTGATGACGCCGACGCCCTGACTTGCTCGAAAAATAATACCT
GCACAACCATACGTAGAGGGAGC
mRNA sequenceShow/hide mRNA sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGACCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTAT
GTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGACCCGAGGCTCTCCGACGAATCCGAGCTGCTGTTTTCACCATACCCTCCTC
CTTTACTTGACCATAGCTTAGTGAAAAGCTTCTTTGACTTCAGCATGCCTTTCATCTTACTCAGAGCTGCTTTGTCAATACCATTTTTACCAACTCCATTCCTCTCACTA
CCTCCTCTACCATTAGCAACCCTTAAGGAAGCCAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGGCTACTGCATCCCAGTCTTCCTCAGGGTTCGTCGTGGCGGA
TCTTGAGCTGCCGTGTGACCCACTTGTTAGATCCTTGATCCCTTTAGGTAGGTCGGGAGTGCTGCTGCCTGATGACGCCGACGCCCTGACTTGCTCGAAAAATAATACCT
GCACAACCATACGTAGAGGGAGC
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASDPRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSIPFLPTPFLSL
PPLPLATLKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALTCSKNNTCTTIRRGS