; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19689 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19689
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpre-mRNA-splicing factor CWC25-like isoform X2
Genome locationCarg_Chr16:1767266..1767475
RNA-Seq ExpressionCarg19689
SyntenyCarg19689
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006417 - regulation of translation (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0051028 - mRNA transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0035145 - exon-exon junction complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576913.1 hypothetical protein SDJN03_24487, partial [Cucurbita argyrosperma subsp. sororia]8.5e-25100Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISK
        MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISK
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISK
KAG7014940.1 hypothetical protein SDJN02_22571, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-28100Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
XP_022942670.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata]3.7e-2074.07Show/hide
Query:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEEDQI+KVEALLAS
Subjt:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
XP_022942672.1 pre-mRNA-splicing factor CWC25-like isoform X2 [Cucurbita moschata]7.9e-2386.96Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEEDQI+KVEALLAS
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
XP_022984554.1 pre-mRNA-splicing factor CWC25 isoform X2 [Cucurbita maxima]6.7e-2285.51Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEE QI+KVEALLAS
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
TrEMBL top hitse value%identityAlignment
A0A6J1D6L3 splicing factor U2af small subunit B1.2e-1974.07Show/hide
Query:  MATKRDEMKR-----------GGGGNYRGRDRFSERKGYRAG-GSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        M  KRDE+KR           GGGGNYRGRDRF  R+GYRAG G TRVEK KHDLFHEANRSPTPKNEEDQI+KVEALLAS
Subjt:  MATKRDEMKR-----------GGGGNYRGRDRFSERKGYRAG-GSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
A0A6J1FPJ0 pre-mRNA-splicing factor CWC25-like isoform X11.8e-2074.07Show/hide
Query:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEEDQI+KVEALLAS
Subjt:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
A0A6J1FQX4 pre-mRNA-splicing factor CWC25-like isoform X23.8e-2386.96Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEEDQI+KVEALLAS
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
A0A6J1J5K1 pre-mRNA-splicing factor CWC25 isoform X11.5e-1972.84Show/hide
Query:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEE QI+KVEALLAS
Subjt:  MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
A0A6J1JAV5 pre-mRNA-splicing factor CWC25 isoform X23.3e-2285.51Show/hide
Query:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
        MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEE QI+KVEALLAS
Subjt:  MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G19650.1 cyclin-related9.4e-0652.94Show/hide
Query:  DEMKRGGGGNYRG-RDRF--SERKGYRAGGSTRVEKR-KHDLFHEANRSPTPKNEEDQISKVEALLAS
        DE   G   +Y+  RDRF  + R G+ +G  TR EK+  HDLF EAN+SP    EE+QI+KVEALLAS
Subjt:  DEMKRGGGGNYRG-RDRF--SERKGYRAGGSTRVEKR-KHDLFHEANRSPTPKNEEDQISKVEALLAS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCAAAAGGGATGAGATGAAGAGAGGTGGTGGTGGGAACTACAGGGGAAGAGACAGGTTTAGTGAGAGGAAAGGATATCGAGCTGGTGGTAGTACCCGTGTGGA
GAAACGGAAGCACGACCTATTTCACGAGGCTAATCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTTCCAAGGTTGAAGCTCTTCTTGCTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCAAAAGGGATGAGATGAAGAGAGGTGGTGGTGGGAACTACAGGGGAAGAGACAGGTTTAGTGAGAGGAAAGGATATCGAGCTGGTGGTAGTACCCGTGTGGA
GAAACGGAAGCACGACCTATTTCACGAGGCTAATCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTTCCAAGGTTGAAGCTCTTCTTGCTTCCTAG
Protein sequenceShow/hide protein sequence
MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS