CuGenDBv2

Gene ID	Carg19701
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin alpha chain
Genome location	Carg_Chr16:1695555..1701112
RNA-Seq Expression	Carg19701
Synteny	Carg19701
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-113

92.12

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

KAG7014928.1 hypothetical protein SDJN02_22559, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-128

100

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

2.6e-113

91.7

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

4.5e-113

91.7

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

2.2e-112

91.29

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFF ELDSTRRF LLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

1.9e-93

78.84

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MA LQILKST+S PSIS P FGSQS+RFFS+ DS     LLHGRRRSLR  CV RR SFRCAA+D+DKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FF G SF+HDG KTPISPPPYVDPYALLEDERISQ+AP VN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

4.1e-96

79.67

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRF   HGRRRSLRYGCV RRLSFRCAAQD+DKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRG+TPTSLLED+++ DFGLGGEM GE RDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FF GPSFVH+G +TPISPPPYVDPYALLEDERISQ APRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

1.3e-113

91.7

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

2.2e-113

91.7

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

2.0e-90

77.18

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Query:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM
        MA LQILKSTVS  S SQ  FG QSSRFF+ELDS+RR    HGRRRSLRYGCV RRLSFRCAAQDS KESNG                   EEPPESLFM
Subjt:  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFM

Query:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY
        KELKKRGITPTSLLEDT +T+F LGGE  GEN DFS  SAVSTEV KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIV+TV+FFFA Y
Subjt:  KELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY

Query:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        FF G SFVHDGT+TP SPPPYV PYA LEDERISQ+APRVN
Subjt:  FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

3.7e-49

66.23

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Query:  EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV
        EEPPESLFMKELK+RG+TPTSLL+D   + D    G+  G +   S+ +A +   DKSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV

Query:  VTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN
        +T+  F ALY + G  F+HDG++TP+SPPPY+DPYALLEDERIS M PR+N
Subjt:  VTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATTTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTAGGAG
GTTTACACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGCTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAATT
TGAGAATAGTTGCAACACCTTCAGAAACCATCACTGACGTGTGTGTGTGTAGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCT
ACTTCCTTGCTTGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAA
AAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAG
GATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCG
TACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTGTAAATTGA

mRNA sequence

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Protein sequence

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MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFRCAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFMKELKKRGITP
TSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPP
YVDPYALLEDERISQMAPRVN

Carg19701 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome