; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19728 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19728
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMADS-box protein SVP-like
Genome locationCarg_Chr16:1561553..1566089
RNA-Seq ExpressionCarg19728
SyntenyCarg19728
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR002487 - Transcription factor, K-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014902.1 MADS-box protein JOINTLESS [Cucurbita argyrosperma subsp. argyrosperma]1.5e-56100Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLK
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLK
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLK

Query:  EIEAVKEKVDNRFLKIKLIITTST
        EIEAVKEKVDNRFLKIKLIITTST
Subjt:  EIEAVKEKVDNRFLKIKLIITTST

XP_022922526.1 MADS-box protein SVP-like isoform X1 [Cucurbita moschata]1.1e-4170.59Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
             RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
Subjt:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

XP_022922528.1 MADS-box protein SVP-like isoform X2 [Cucurbita moschata]8.0e-4271.05Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
            RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
Subjt:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

XP_023552055.1 MADS-box protein SVP-like isoform X1 [Cucurbita pepo subsp. pepo]4.0e-4169.28Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
             RHMKGEELEELGIEELKQLEKLLEIGLNRV+ETKDEKFLKEI+AVKEK
Subjt:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

XP_023552057.1 MADS-box protein SVP-like isoform X2 [Cucurbita pepo subsp. pepo]3.1e-4169.74Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
            RHMKGEELEELGIEELKQLEKLLEIGLNRV+ETKDEKFLKEI+AVKEK
Subjt:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

TrEMBL top hitse value%identityAlignment
A0A1S3BYS5 MADS-box protein JOINTLESS-like isoform X19.0e-3962.57Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK-----VDNRFLKIKLIIT
             RHMKGEEL+ELGIEELK+LEKLLE GLNRVIETKDEKFLKEI  VKEK      +N+ L+ KL+ T
Subjt:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK-----VDNRFLKIKLIIT

A0A6J1E3I4 MADS-box protein SVP-like isoform X15.1e-4270.59Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
             RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
Subjt:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

A0A6J1E6W1 MADS-box protein SVP-like isoform X23.9e-4271.05Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
            RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
Subjt:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

A0A6J1J9W9 MADS-box protein SVP-like isoform X29.6e-4168.42Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
            RHMKGEEL+ELGIEELK+LEKLLEIGLNRV+ETKDEKFLKEI+AVKEK
Subjt:  ----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

A0A6J1J9Z1 MADS-box protein SVP-like isoform X11.3e-4067.97Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
             RHMKGEEL+ELGIEELK+LEKLLEIGLNRV+ETKDEKFLKEI+AVKEK
Subjt:  -----RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

SwissProt top hitse value%identityAlignment
O82794 MADS-box protein AGL242.7e-2444.23Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
                R ++GE+L+ L +EEL++LEKLLE GL+RV E K E  + +I +++++
Subjt:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

Q5K4R0 MADS-box transcription factor 478.7e-2341.56Show/hide
Query:  RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS------------------------------------------
        R++I I++IDN+AARQVTFSKRRRGLFKKA EL+ LCDA++ L+VFSA+GKLF ++S+                                          
Subjt:  RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS------------------------------------------

Query:  ------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
              R M+GEEL  L +E+L++LEK LE GL  V++TK +K L EI+ ++ K
Subjt:  ------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

Q9FUY6 MADS-box protein JOINTLESS4.0e-2848.72Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R+KIQIKKIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFDYSSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
                R M+GEEL+ L IEEL+QLE+ LE GL+RVIE K +K ++EI  +++K
Subjt:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

Q9FVC1 MADS-box protein SVP4.5e-2747.44Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
                R M+GEEL+ L IEEL+QLEK LE GL RVIETK +K + EI  +++K
Subjt:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

Q9XJ66 MADS-box transcription factor 221.8e-2343.87Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R++ +IK+I++ AARQVTFSKRRRGLFKKA EL+ LCDAD+ALIVFS++GKL  ++SS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  -------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
               R M+GEELE L I+EL+QLEK LE GL+RV+ TKD++F+++I  ++ K
Subjt:  -------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

Arabidopsis top hitse value%identityAlignment
AT2G22540.1 K-box region and MADS-box transcription factor family protein3.2e-2847.44Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
                R M+GEEL+ L IEEL+QLEK LE GL RVIETK +K + EI  +++K
Subjt:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

AT2G22540.2 K-box region and MADS-box transcription factor family protein9.2e-2848.34Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS-----------------------------------------
        M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFD                                            
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS-----------------------------------------

Query:  --SRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
           R M+GEEL+ L IEEL+QLEK LE GL RVIETK +K + EI  +++K
Subjt:  --SRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

AT3G58780.2 K-box region and MADS-box transcription factor family protein3.9e-1835.8Show/hide
Query:  RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDY-----------------------------------------SSSR
        R KI+IK+I+N   RQVTF KRR GL KKA+EL+ LCDA++AL++FS  G+L++Y                                         +S+R
Subjt:  RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDY-----------------------------------------SSSR

Query:  HMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKV-----DNRFLKIKL
        H+ GE L  L  +ELK LE  LE G++RV   K+E  + EIE ++++      +N +L+ K+
Subjt:  HMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKV-----DNRFLKIKL

AT4G24540.1 AGAMOUS-like 241.9e-2544.23Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------
        M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS                                        
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS----------------------------------------

Query:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK
                R ++GE+L+ L +EEL++LEKLLE GL+RV E K E  + +I +++++
Subjt:  --------RHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEK

AT5G51870.1 AGAMOUS-like 713.9e-1855.06Show/hide
Query:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMK-----GEELEELGIEELKQLEKLLE
        M R KI+IKKI+N+ +RQVTFSKRR GLFKKAHEL+ LCDA +A IVFS SG+L +YSSS+  K     G+      + E  Q+E+ L+
Subjt:  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMK-----GEELEELGIEELKQLEKLLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTAC
TCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAG
AAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCATAGAGACAAAGGATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGTCGAT
AATCGATTTTTGAAAATTAAGCTTATAATCACTACTTCTACGTAA
mRNA sequenceShow/hide mRNA sequence
TTCCTTTACCTCTTTTAGGTACATCACCCATTAACAAATTTGCTCATAAACCATTCCATTCCCTTTCATCTGTCCCAAAAAGGAAACCCTTTTTCCCCTTTTTCTCTCTC
CAAAAATCCATGGCACCTGTTCATCAAGCTTCATAATTTGCAGCTTCACCACCAAATCTATCGAGCAAATTTATACGGTTTATATGTTCGTAAAGTCATCGTTTTTCATG
CAAATTACAGAAAATTTGGATCTGGGTCGAGTTGGGTCGAGTTGAATTATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTT
TTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATT
CTAGCTCAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCATAGAGACAAAG
GATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGTCGATAATCGATTTTTGAAAATTAAGCTTATAATCACTACTTCTACGTAACACAACAGCTTCCTAAC
TTTTTCGAATTTGGCTAAGAATTCAAGTGCTTACATGATTTTCAAGAACAAAATGGATTATCGAAAAGGGTCTTAAATATTCTCGAGCACGAACGATAAAAATGCGAACC
CGCTTCATATAATACATGAATATTGATTGCAGGAAGCTTTGCTGATGAAAGAGAATCAGAGATTGAGGAATCAAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAA
GCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCCCAAGATTGTGATGATATTTCTCTCAAATTGGG
TCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTT
GCATACAGACAATAAGGATGTGAAAAGGCCAATTCATTCAATATCATATCATGTTTTCAAAGCAGAAATGAGTTACATACATGAATATTGTTTCTGCATACCAATTGATT
AAGAGTTGATGAAACTTTCAAAGGGAGTTTTATAAGGAAAATGACACTTCTCAGACAAAGTAAACGAACCTGCGTGCCTGCTGATCTTGAAGCACATACATCATAAATAT
ATTGTAAAGCCCCTAGTCTACAGCTAGCCGATATTGTCATCTTTGGATTTTTCCTTCTGAGTTTTTTCTCAAGGTTTTAAAACATGTCTATTAGGGAGAGGTTTCCGTAC
CTTTATAAATAATACTTTGTTCCCCTCTCTAACC
Protein sequenceShow/hide protein sequence
MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKVD
NRFLKIKLIITTST