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Carg19752 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19752
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAlanine--tRNA ligase
Genome locationCarg_Chr02:969308..969628
RNA-Seq ExpressionCarg19752
SyntenyCarg19752
Gene Ontology termsGO:0070143 - mitochondrial alanyl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0004813 - alanine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003156 - DHHA1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604957.1 Alanine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.0e-50100Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

KAG7034992.1 Alanine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-50100Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

XP_023533448.1 alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]9.0e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

XP_023533449.1 alanine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]9.0e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

XP_023533450.1 alanine--tRNA ligase, chloroplastic/mitochondrial isoform X3 [Cucurbita pepo subsp. pepo]9.0e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

TrEMBL top hitse value%identityAlignment
A0A6J1G760 Probable alanine--tRNA ligase, chloroplastic5.7e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

A0A6J1G7K6 Probable alanine--tRNA ligase, chloroplastic5.7e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

A0A6J1G7M4 Probable alanine--tRNA ligase, chloroplastic5.7e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

A0A6J1I0H1 Probable alanine--tRNA ligase, chloroplastic7.4e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLM+NLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

A0A6J1I5A9 Probable alanine--tRNA ligase, chloroplastic7.4e-5099.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLKGAAEFLM+NLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        LSEKAS
Subjt:  LSEKAS

SwissProt top hitse value%identityAlignment
B8B4H5 Alanine--tRNA ligase, chloroplastic/mitochondrial4.5e-3669.81Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        M D DAD LK AAE+L+D L+DPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G IAKLCGGGGGG+PNFAQAGGRKPENL  ALE AR E+V  
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        +S K+S
Subjt:  LSEKAS

B9FSH5 Alanine--tRNA ligase, chloroplastic/mitochondrial4.5e-3669.81Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        M D DAD LK AAE+L+D L+DPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G IAKLCGGGGGG+PNFAQAGGRKPENL  ALE AR E+V  
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        +S K+S
Subjt:  LSEKAS

B9HQZ6 Alanine--tRNA ligase, chloroplastic/mitochondrial6.5e-4381.13Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDD DAD+LK AAE+LMD LQDPAAI+LGSCP EGKVSLVAAFTP VVD+G+QA  FIGPIAKLCGGGGGGRPNFAQAGGRKPENL NALE AR++L+ I
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKAS
        L+EKA+
Subjt:  LSEKAS

C5Z7K4 Alanine--tRNA ligase, chloroplastic/mitochondrial2.5e-3468.57Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        M D DAD LK AAE+L+  LQDPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G IAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR+E+V  
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEKA
        +S  +
Subjt:  LSEKA

Q9FFC7 Alanine--tRNA ligase, chloroplastic/mitochondrial2.0e-3675.96Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLK AAE L+  L+DP A+VLGS P + KVSLVAAF+P VV LGVQA  FIGPIAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR +LV  
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEK
        LSEK
Subjt:  LSEK

Arabidopsis top hitse value%identityAlignment
AT1G49930.1 BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1)1.0e-0643.06Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGR
        MDDTDADSLK AAE L+  L DP  +VLGS P +                            KLCGGGGGG+
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGR

AT5G22800.1 Alanyl-tRNA synthetase, class IIc1.4e-3775.96Show/hide
Query:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI
        MDDTDADSLK AAE L+  L+DP A+VLGS P + KVSLVAAF+P VV LGVQA  FIGPIAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR +LV  
Subjt:  MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRI

Query:  LSEK
        LSEK
Subjt:  LSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATACCGATGCCGATTCACTAAAAGGTGCAGCCGAGTTCCTGATGGACAATCTTCAAGATCCCGCAGCTATCGTACTAGGCTCCTGTCCAGGCGAAGGAAAAGT
GAGTTTAGTAGCAGCATTTACGCCAACTGTTGTTGATCTGGGAGTGCAGGCAAGGAATTTCATAGGACCTATAGCTAAGTTGTGTGGTGGAGGAGGGGGTGGGAGGCCCA
ATTTTGCTCAGGCAGGTGGAAGAAAACCTGAGAACTTGTTGAACGCCCTCGAAAACGCTCGATCAGAGCTCGTTCGAATCTTATCTGAGAAGGCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGATACCGATGCCGATTCACTAAAAGGTGCAGCCGAGTTCCTGATGGACAATCTTCAAGATCCCGCAGCTATCGTACTAGGCTCCTGTCCAGGCGAAGGAAAAGT
GAGTTTAGTAGCAGCATTTACGCCAACTGTTGTTGATCTGGGAGTGCAGGCAAGGAATTTCATAGGACCTATAGCTAAGTTGTGTGGTGGAGGAGGGGGTGGGAGGCCCA
ATTTTGCTCAGGCAGGTGGAAGAAAACCTGAGAACTTGTTGAACGCCCTCGAAAACGCTCGATCAGAGCTCGTTCGAATCTTATCTGAGAAGGCAAGCTAG
Protein sequenceShow/hide protein sequence
MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS