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Carg19757 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19757
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCarg_Chr02:1000488..1000829
RNA-Seq ExpressionCarg19757
SyntenyCarg19757
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035729.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.0e-0454.35Show/hide
Query:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI
        SLVY G  K+ W+ LKER RQ+NGP I +L K L TT QG + V++
Subjt:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI

KAG7034997.1 hypothetical protein SDJN02_01790, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-34100Show/hide
Query:  MDGLLSLRNCLKVQLITSLGARKVSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDIPGNLN
        MDGLLSLRNCLKVQLITSLGARKVSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDIPGNLN
Subjt:  MDGLLSLRNCLKVQLITSLGARKVSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDIPGNLN

XP_022145891.1 uncharacterized protein LOC111015239 [Momordica charantia]1.6e-0555.56Show/hide
Query:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD
        S++Y G AKD W++LKER +Q++ PRI QL K+L TT+QGT+S++
Subjt:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD

XP_038888312.1 uncharacterized protein LOC120078158 [Benincasa hispida]2.1e-0557.45Show/hide
Query:  VSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI
        VSLVY G  K+ W++LKER  Q+NGP I QL K L TT QG +SV++
Subjt:  VSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI

XP_038894602.1 uncharacterized protein LOC120083117 [Benincasa hispida]7.3e-0660.87Show/hide
Query:  VSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD
        VSLVY G  KD W++LKER RQ+NGP + QL K L TTVQ T+S++
Subjt:  VSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD

TrEMBL top hitse value%identityAlignment
A0A5A7T2X0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-0454.35Show/hide
Query:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI
        SLVY G  K+ W+ LKER RQ+NGP I +L K L TT QG + V++
Subjt:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI

A0A5D3D9Z1 Retrotrans_gag domain-containing protein7.4e-0450Show/hide
Query:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI
        SLVY+G  K+ W++LKE  RQ+NGP I QL + L T  QG++S+++
Subjt:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI

A0A6J1CXR2 uncharacterized protein LOC1110152397.9e-0655.56Show/hide
Query:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD
        S++Y G AKD W++LKER +Q++ PRI QL K+L TT+QGT+S++
Subjt:  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGACTTCTCTCGTTACGAAATTGCTTGAAGGTGCAACTAATTACATCTCTTGGAGCAAGGAAAGTCAGTCTTGTTTACAATGGATGTGCAAAGGATGCATGGAA
TAAACTAAAGGAGCGTTGTCGCCAAACAAATGGACCACGGATATCCCAGCTCTGCAAACAACTGGAAACCACAGTTCAAGGAACTATGTCAGTGGACATTCCTGGCAACC
TGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGGACTTCTCTCGTTACGAAATTGCTTGAAGGTGCAACTAATTACATCTCTTGGAGCAAGGAAAGTCAGTCTTGTTTACAATGGATGTGCAAAGGATGCATGGAA
TAAACTAAAGGAGCGTTGTCGCCAAACAAATGGACCACGGATATCCCAGCTCTGCAAACAACTGGAAACCACAGTTCAAGGAACTATGTCAGTGGACATTCCTGGCAACC
TGAATTAG
Protein sequenceShow/hide protein sequence
MDGLLSLRNCLKVQLITSLGARKVSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDIPGNLN