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Carg19777 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19777
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationCarg_Chr02:1130124..1131053
RNA-Seq ExpressionCarg19777
SyntenyCarg19777
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR031052 - FHY3/FAR1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010806.1 Protein FAR1-RELATED SEQUENCE 9 [Cucurbita argyrosperma subsp. argyrosperma]6.9e-2535.84Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------
        MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +   +F +  ++   F    Y          NH G        
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------

Query:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL
                                                                                          +NEA T EEFESCWE+LL
Subjt:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL

Query:  NKYYIMDNEWLQLMYSARQQWGYLFM
        N+YYIMDN+WLQLMYSARQQW  ++M
Subjt:  NKYYIMDNEWLQLMYSARQQWGYLFM

KAG7035017.1 Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-68100Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLN
        MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLN
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLN

Query:  KYYIMDNEWLQLMYSARQQWGYLFM
        KYYIMDNEWLQLMYSARQQWGYLFM
Subjt:  KYYIMDNEWLQLMYSARQQWGYLFM

XP_022944451.1 protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata]6.9e-2535.84Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------
        MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +   +F +  ++   F    Y          NH G        
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------

Query:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL
                                                                                          +NEA T EEFESCWE+LL
Subjt:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL

Query:  NKYYIMDNEWLQLMYSARQQWGYLFM
        N+YYIMDN+WLQLMYSARQQW  ++M
Subjt:  NKYYIMDNEWLQLMYSARQQWGYLFM

XP_022947931.1 uncharacterized protein LOC111451664 isoform X3 [Cucurbita moschata]2.5e-2782.5Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHR
        MSGGRQRTLGVGIQHILD LKRMQAENPAFYYAVQGDGDHSGWSILGIGM           FFQEPAIVFA GLYSE HR
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHR

XP_023513010.1 protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo]6.9e-2535.84Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------
        MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +   +F +  ++   F    Y          NH G        
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------

Query:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL
                                                                                          +NEA T EEFESCWE+LL
Subjt:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL

Query:  NKYYIMDNEWLQLMYSARQQWGYLFM
        N+YYIMDN+WLQLMYSARQQW  ++M
Subjt:  NKYYIMDNEWLQLMYSARQQWGYLFM

TrEMBL top hitse value%identityAlignment
A0A5A7U2C0 Protein FAR1-RELATED SEQUENCE2.2e-2438.57Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWIGLTKMLLQRF----FQEPAIVFAG--------------GL
        MSGGRQRTL VGIQH+LDYLKRMQAENPAFYYAVQGDGD HSG +I            + G T +L   F    ++ P   F+G               L
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWIGLTKMLLQRF----FQEPAIVFAG--------------GL

Query:  Y------------------------------------------------------------------------SENHRGINEAATFEEFESCWEALLNKY
        Y                                                                        +E  + +NEA T EEFESCWEALLN+Y
Subjt:  Y------------------------------------------------------------------------SENHRGINEAATFEEFESCWEALLNKY

Query:  YIMDNEWLQLMYSARQQWGYLFM
        YIMDNEWLQLMY ARQQW  ++M
Subjt:  YIMDNEWLQLMYSARQQWGYLFM

A0A5D3BPC1 Protein FAR1-RELATED SEQUENCE2.2e-2438.57Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWIGLTKMLLQRF----FQEPAIVFAG--------------GL
        MSGGRQRTL VGIQH+LDYLKRMQAENPAFYYAVQGDGD HSG +I            + G T +L   F    ++ P   F+G               L
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWIGLTKMLLQRF----FQEPAIVFAG--------------GL

Query:  Y------------------------------------------------------------------------SENHRGINEAATFEEFESCWEALLNKY
        Y                                                                        +E  + +NEA T EEFESCWEALLN+Y
Subjt:  Y------------------------------------------------------------------------SENHRGINEAATFEEFESCWEALLNKY

Query:  YIMDNEWLQLMYSARQQWGYLFM
        YIMDNEWLQLMY ARQQW  ++M
Subjt:  YIMDNEWLQLMYSARQQWGYLFM

A0A6J1FUG3 Protein FAR1-RELATED SEQUENCE3.3e-2535.84Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------
        MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +   +F +  ++   F    Y          NH G        
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIV---FAGGLY--------SENHRG--------

Query:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL
                                                                                          +NEA T EEFESCWE+LL
Subjt:  ----------------------------------------------------------------------------------INEAATFEEFESCWEALL

Query:  NKYYIMDNEWLQLMYSARQQWGYLFM
        N+YYIMDN+WLQLMYSARQQW  ++M
Subjt:  NKYYIMDNEWLQLMYSARQQWGYLFM

A0A6J1G7U8 uncharacterized protein LOC111451664 isoform X31.2e-2782.5Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHR
        MSGGRQRTLGVGIQHILD LKRMQAENPAFYYAVQGDGDHSGWSILGIGM           FFQEPAIVFA GLYSE HR
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHR

A0A6J1J9D1 Protein FAR1-RELATED SEQUENCE2.2e-2435.14Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILG-----------IGMWIGLTKMLLQRFFQEPAIVFAG-----------------
        MSGGRQRTLGVG+QH+LD+LKRMQAENPA YYAVQGDGD SG +I              G  + L     ++ ++ P   F G                 
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILG-----------IGMWIGLTKMLLQRFFQEPAIVFAG-----------------

Query:  ---------------------------------------------------------------------GLYSENHRGINEAATFEEFESCWEALLNKYY
                                                                                +E  + +NEA T EEFESCWE+LLN+YY
Subjt:  ---------------------------------------------------------------------GLYSENHRGINEAATFEEFESCWEALLNKYY

Query:  IMDNEWLQLMYSARQQWGYLFM
        IMDN+WLQLMYSARQQW  ++M
Subjt:  IMDNEWLQLMYSARQQWGYLFM

SwissProt top hitse value%identityAlignment
Q3E7I5 Protein FAR1-RELATED SEQUENCE 123.1e-0436.84Show/hide
Query:  QEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW
        +E  I F      E  + I +  T  EF+S W AL+NKY + D+ WL+ +Y  R+ W
Subjt:  QEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW

Q9SZL7 Protein FAR1-RELATED SEQUENCE 92.0e-0645.45Show/hide
Query:  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM
        + E  T  EFE+ W++++ +YY+ DN+WLQ +Y+ARQQW  +F+
Subjt:  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM

Q9SZL7 Protein FAR1-RELATED SEQUENCE 95.9e-0346.88Show/hide
Query:  IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS
        ++H+L+YLKR Q ENP F YA++ D  +  W+
Subjt:  IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS

Q9SZL8 Protein FAR1-RELATED SEQUENCE 55.2e-0748.89Show/hide
Query:  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW
        S+ H+ +N   + E+FE CW +LL+KY + D+EWLQ +YS R+QW
Subjt:  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW

Q9SZL8 Protein FAR1-RELATED SEQUENCE 51.4e-0448.78Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS
        M   RQ+++   IQ +LDYL++M A+NP F+Y+VQG  D S
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS

Q9ZVC9 Protein FAR1-RELATED SEQUENCE 32.3e-0724.88Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---
        M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                                              H G +IL G  +   
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---

Query:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY
             +I L K  L     +P +                VF G  +  N                          +  IN   T EEFES W ++++KY 
Subjt:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY

Query:  IMDNEWLQLMYSARQQW
        +  +EWL  +Y+AR QW
Subjt:  IMDNEWLQLMYSARQQW

Arabidopsis top hitse value%identityAlignment
AT2G27110.1 FAR1-related sequence 31.6e-0824.88Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---
        M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                                              H G +IL G  +   
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---

Query:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY
             +I L K  L     +P +                VF G  +  N                          +  IN   T EEFES W ++++KY 
Subjt:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY

Query:  IMDNEWLQLMYSARQQW
        +  +EWL  +Y+AR QW
Subjt:  IMDNEWLQLMYSARQQW

AT2G27110.2 FAR1-related sequence 31.6e-0824.88Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---
        M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                                              H G +IL G  +   
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---

Query:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY
             +I L K  L     +P +                VF G  +  N                          +  IN   T EEFES W ++++KY 
Subjt:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY

Query:  IMDNEWLQLMYSARQQW
        +  +EWL  +Y+AR QW
Subjt:  IMDNEWLQLMYSARQQW

AT2G27110.3 FAR1-related sequence 31.6e-0824.88Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---
        M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                                              H G +IL G  +   
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD----------------------------------------------HSGWSIL-GIGM---

Query:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY
             +I L K  L     +P +                VF G  +  N                          +  IN   T EEFES W ++++KY 
Subjt:  -----WIGLTKMLLQRFFQEPAI----------------VFAGGLYSEN--------------------------HRGINEAATFEEFESCWEALLNKYY

Query:  IMDNEWLQLMYSARQQW
        +  +EWL  +Y+AR QW
Subjt:  IMDNEWLQLMYSARQQW

AT4G38170.1 FAR1-related sequence 91.4e-0745.45Show/hide
Query:  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM
        + E  T  EFE+ W++++ +YY+ DN+WLQ +Y+ARQQW  +F+
Subjt:  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM

AT4G38170.1 FAR1-related sequence 94.2e-0446.88Show/hide
Query:  IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS
        ++H+L+YLKR Q ENP F YA++ D  +  W+
Subjt:  IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS

AT4G38180.1 FAR1-related sequence 53.7e-0848.89Show/hide
Query:  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW
        S+ H+ +N   + E+FE CW +LL+KY + D+EWLQ +YS R+QW
Subjt:  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW

AT4G38180.1 FAR1-related sequence 51.0e-0548.78Show/hide
Query:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS
        M   RQ+++   IQ +LDYL++M A+NP F+Y+VQG  D S
Subjt:  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGA
TGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGC
TATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTT
CAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG
mRNA sequenceShow/hide mRNA sequence
TGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGTCACCGTCACTTATTCCTTTAGAATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAG
CATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTG
GATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACAT
TTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTT
ATG
Protein sequenceShow/hide protein sequence
MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWL
QLMYSARQQWGYLFM