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Carg19779 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19779
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase ATL41-like
Genome locationCarg_Chr02:1135705..1136136
RNA-Seq ExpressionCarg19779
SyntenyCarg19779
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604984.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]7.3e-79100Show/hide
Query:  MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW
        MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW
Subjt:  MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW

Query:  LERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        LERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Subjt:  LERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

XP_022947864.1 E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]3.1e-77100Show/hide
Query:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
        FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
Subjt:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER

Query:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Subjt:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

XP_022971128.1 RING-H2 finger protein ATL18 [Cucurbita maxima]2.8e-7096.27Show/hide
Query:  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCP
        FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEICSICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCP
Subjt:  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCP

Query:  LCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        LCRCFFFFNI NRHERKLQFVVPDNPSCLYYFLQ
Subjt:  LCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]4.6e-5779.86Show/hide
Query:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERN
        LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERN
Subjt:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERN

Query:  RFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        RFTCPLCRC  FFNI   HERKL+FVVPDNPS LYYFLQ
Subjt:  RFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

XP_023533802.1 uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo]2.0e-7699.29Show/hide
Query:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
        FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLER
Subjt:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER

Query:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Subjt:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KFW5 RING-type domain-containing protein5.7e-3757.97Show/hide
Query:  ISFFNTYVWIPLLRLKDAIIGGV-SVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFAR-GDSVCVLPDCSHVFHFDCIEKWLERNR
        I FFNT++WIPL R+  AI+G V +VF L   P S       L+VR Y+E    D  + EEICSICL EF R GDSVC LP+C H+FHF+CI++W++RNR
Subjt:  ISFFNTYVWIPLLRLKDAIIGGV-SVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFAR-GDSVCVLPDCSHVFHFDCIEKWLERNR

Query:  FTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        FTCPLCRCFFFF    + + K  F+VPDNPS LYYFLQ
Subjt:  FTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

A0A6J1CHK3 RING-H2 finger protein ATL646.9e-3560Show/hide
Query:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEEL-QRSDDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
        L + F    V IPL  LK AI+   +VFR +  P            RRYEEL +R+D  AE+E+ CSICL EFAR DSV  LPDC+HVFH +CIEKW+ER
Subjt:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEEL-QRSDDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER

Query:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        N FTCPLCRC  FFNI NR E KL+FV+PDNPSCLYYFLQ
Subjt:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

A0A6J1FTE6 RING-H2 finger protein ATL18-like4.9e-5779.14Show/hide
Query:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERN
        LAI FFNT+VWIPL R+K+AI+G  SVFRL  +PE D S GGTLLVRRYEELQRSDDRA EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERN
Subjt:  LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERN

Query:  RFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        RFTCPLCRC  FFNI   HE+KL+FVVPDNPS LYYFLQ
Subjt:  RFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like1.5e-77100Show/hide
Query:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
        FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER
Subjt:  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLER

Query:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Subjt:  NRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

A0A6J1I5X8 RING-H2 finger protein ATL181.3e-7096.27Show/hide
Query:  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCP
        FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEICSICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCP
Subjt:  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCP

Query:  LCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
        LCRCFFFFNI NRHERKLQFVVPDNPSCLYYFLQ
Subjt:  LCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL471.7e-0954.17Show/hide
Query:  CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF
        C++CL EF+  D + +LP+CSH FH DCI+ WL  N  TCPLCR   F
Subjt:  CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF

Q9FKX5 NEP1-interacting protein-like 19.7e-1043.06Show/hide
Query:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR
        S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KWL R+  +CPLCR
Subjt:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR

Q9FL07 RING-H2 finger protein ATL461.3e-0937.5Show/hide
Query:  LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF
        L  A I  + VF    +  S G  GG             +  A+E   C++CL EF+  D + +LP CSH FH +CI+ WL+ N  TCPLCR   F
Subjt:  LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF

Q9LSW9 RING-H2 finger protein ATL163.3e-1036.63Show/hide
Query:  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLC
        V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLC
Subjt:  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLC

Query:  R
        R
Subjt:  R

Q9SZL4 RING-H2 finger protein ATL188.0e-1250Show/hide
Query:  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF------NIRNRH
        D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F         N+ N H
Subjt:  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF------NIRNRH

Arabidopsis top hitse value%identityAlignment
AT4G38140.1 RING/U-box superfamily protein5.7e-1350Show/hide
Query:  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF------NIRNRH
        D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F         N+ N H
Subjt:  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF------NIRNRH

AT5G41400.1 RING/U-box superfamily protein5.3e-1137.5Show/hide
Query:  FVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW-LERNRFTCPLCRCFF
        F P +   +G  L V R+ EL R    +  + C++CL EF   D +  L +C H+FH  C+++W +  N+ TCPLCR  F
Subjt:  FVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW-LERNRFTCPLCRCFF

AT5G43420.1 RING/U-box superfamily protein2.4e-1136.63Show/hide
Query:  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLC
        V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLC
Subjt:  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLC

Query:  R
        R
Subjt:  R

AT5G66070.1 RING/U-box superfamily protein6.9e-1143.06Show/hide
Query:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR
        S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KWL R+  +CPLCR
Subjt:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR

AT5G66070.2 RING/U-box superfamily protein6.9e-1143.06Show/hide
Query:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR
        S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KWL R+  +CPLCR
Subjt:  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATT
TGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGA
TGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTC
TGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATT
TGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGA
TGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTC
TGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA
Protein sequenceShow/hide protein sequence
MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPL
CRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ