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Carg19836 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19836
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCarg_Chr05:4842235..4846541
RNA-Seq ExpressionCarg19836
SyntenyCarg19836
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062476.1 uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa]2.9e-1346.74Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQS
        MST KQLGK QA+RL  +K+Q+  + EV D +  L SR+ EI  KAD I+ +  RL+ +P++EL+TRV+ LE +    G +EH DS T + S
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQS

KAG7029886.1 hypothetical protein SDJN02_08229, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-127100Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQLDHV
        MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQLDHV
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQLDHV

Query:  HYPSDYLTVKTYLGGTPKFLPQSFETAEISKHKEGERIREAEEDEEELKNERIDLTSVAGSGFVTYVGSGSLRAWADARGRWVARLGWECWARMQCWAHI
        HYPSDYLTVKTYLGGTPKFLPQSFETAEISKHKEGERIREAEEDEEELKNERIDLTSVAGSGFVTYVGSGSLRAWADARGRWVARLGWECWARMQCWAHI
Subjt:  HYPSDYLTVKTYLGGTPKFLPQSFETAEISKHKEGERIREAEEDEEELKNERIDLTSVAGSGFVTYVGSGSLRAWADARGRWVARLGWECWARMQCWAHI

Query:  INPGFPGNQCPACAVDTDLGLFEEICVED
        INPGFPGNQCPACAVDTDLGLFEEICVED
Subjt:  INPGFPGNQCPACAVDTDLGLFEEICVED

XP_022940258.1 uncharacterized protein LOC111445936 [Cucurbita moschata]1.7e-2164.58Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MS+AKQLGKSQA+RL  I+DQLL  +EV D M LL+S MNEI+ KAD+INEM  RLEAM V+ELM RVE LE++A TVGGFE+ DS T F + M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

XP_022981546.1 uncharacterized protein LOC111480631 [Cucurbita maxima]3.7e-2468.75Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MSTAKQLGKSQA+RL  I+DQLL  +EV D M LL+S MNEI+ KAD+INEM GRLEAM VRELM RVE LE++A TVGGFE+ DS TGF + M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

XP_023525752.1 uncharacterized protein LOC111789266 [Cucurbita pepo subsp. pepo]2.2e-2164.58Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MST KQLGKSQ +RL  I+DQLL  +EV D M LL+S MNEI+ KAD+INEM  RLEAM VRELM RVE LE++A TVGGFE+ DS T F + M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9Z3 Uncharacterized protein3.5e-1240.62Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MS+A   GK+Q +RL  +++Q+L ++EVPD +  L+SR+ EI+ K D I+ +AG +E +P++EL+ RV+ LE        +E+RDS +GF   M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

A0A5D3BRU5 Uncharacterized protein2.0e-1242.55Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAM
        MS+    GK+Q +RL  +++Q+L + EVPD +  L+SR++EIS K D I+ +AG +E +P++EL+ RV+ LE      G +E+RDS +GF + M
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAM

A0A5D3DUL1 Uncharacterized protein1.4e-1346.74Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQS
        MST KQLGK QA+RL  +K+Q+  + EV D +  L SR+ EI  KAD I+ +  RL+ +P++EL+TRV+ LE +    G +EH DS T + S
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQS

A0A6J1FNS3 uncharacterized protein LOC1114459368.3e-2264.58Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MS+AKQLGKSQA+RL  I+DQLL  +EV D M LL+S MNEI+ KAD+INEM  RLEAM V+ELM RVE LE++A TVGGFE+ DS T F + M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

A0A6J1IU93 uncharacterized protein LOC1114806311.8e-2468.75Show/hide
Query:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ
        MSTAKQLGKSQA+RL  I+DQLL  +EV D M LL+S MNEI+ KAD+INEM GRLEAM VRELM RVE LE++A TVGGFE+ DS TGF + M +
Subjt:  MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTGCAAAACAATTGGGCAAATCCCAAGCTAACCGATTAGCTGGAATCAAAGATCAATTACTCTGCATGAGTGAAGTTCCTGATGGAATGGGGCTTTTGGATTC
TCGCATGAATGAGATTTCCGCTAAAGCCGACAGGATCAATGAGATGGCAGGTCGCCTTGAGGCAATGCCTGTCCGCGAATTAATGACTAGGGTCGAAGTCCTAGAAGACG
AGGCCACAACTGTTGGTGGCTTCGAGCATAGAGATAGCTTGACGGGCTTTCAATCCGCAATGCCACAGTTAGATCATGTTCATTACCCAAGCGACTACTTGACGGTTAAA
ACATACCTTGGAGGTACCCCGAAATTCCTCCCTCAGAGCTTCGAAACTGCTGAAATTTCAAAACATAAAGAGGGGGAGAGAATTAGAGAAGCAGAGGAGGATGAAGAAGA
ACTTAAGAACGAGCGAATCGATCTGACGTCCGTCGCCGGATCCGGTTTTGTGACCTACGTGGGCTCAGGCAGTCTGCGCGCCTGGGCTGATGCTCGAGGCCGATGGGTTG
CTCGTCTGGGTTGGGAATGTTGGGCTCGTATGCAGTGCTGGGCTCATATTATTAATCCTGGATTTCCTGGAAATCAGTGCCCTGCATGCGCTGTTGATACTGATCTTGGA
TTGTTTGAGGAGATTTGTGTTGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACTGCAAAACAATTGGGCAAATCCCAAGCTAACCGATTAGCTGGAATCAAAGATCAATTACTCTGCATGAGTGAAGTTCCTGATGGAATGGGGCTTTTGGATTC
TCGCATGAATGAGATTTCCGCTAAAGCCGACAGGATCAATGAGATGGCAGGTCGCCTTGAGGCAATGCCTGTCCGCGAATTAATGACTAGGGTCGAAGTCCTAGAAGACG
AGGCCACAACTGTTGGTGGCTTCGAGCATAGAGATAGCTTGACGGGCTTTCAATCCGCAATGCCACAGTTAGATCATGTTCATTACCCAAGCGACTACTTGACGGTTAAA
ACATACCTTGGAGGTACCCCGAAATTCCTCCCTCAGAGCTTCGAAACTGCTGAAATTTCAAAACATAAAGAGGGGGAGAGAATTAGAGAAGCAGAGGAGGATGAAGAAGA
ACTTAAGAACGAGCGAATCGATCTGACGTCCGTCGCCGGATCCGGTTTTGTGACCTACGTGGGCTCAGGCAGTCTGCGCGCCTGGGCTGATGCTCGAGGCCGATGGGTTG
CTCGTCTGGGTTGGGAATGTTGGGCTCGTATGCAGTGCTGGGCTCATATTATTAATCCTGGATTTCCTGGAAATCAGTGCCCTGCATGCGCTGTTGATACTGATCTTGGA
TTGTTTGAGGAGATTTGTGTTGAAGATTGA
Protein sequenceShow/hide protein sequence
MSTAKQLGKSQANRLAGIKDQLLCMSEVPDGMGLLDSRMNEISAKADRINEMAGRLEAMPVRELMTRVEVLEDEATTVGGFEHRDSLTGFQSAMPQLDHVHYPSDYLTVK
TYLGGTPKFLPQSFETAEISKHKEGERIREAEEDEEELKNERIDLTSVAGSGFVTYVGSGSLRAWADARGRWVARLGWECWARMQCWAHIINPGFPGNQCPACAVDTDLG
LFEEICVED