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Carg19866 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19866
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PCF8-like
Genome locationCarg_Chr13:7130956..7131497
RNA-Seq ExpressionCarg19866
SyntenyCarg19866
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]3.9e-5064.77Show/hide
Query:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHL
        MEERRLRSSAGSGKVY SKG RAR+LRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAID LSRPLETEDGKR                       
Subjt:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHL

Query:  KISSKMFDYCFCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSEQCNKWVTILSDVGIAAA
                                       QPLCFESNDNECHAGGILRHAATVFKSE CN WVTILS+VGIA A
Subjt:  KISSKMFDYCFCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSEQCNKWVTILSDVGIAAA

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]4.1e-2384.93Show/hide
Query:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED
        RRL SS  AG+GKVY SKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AIDALSRPL+TED
Subjt:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]1.6e-2274.42Show/hide
Query:  RRLRSS----AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLP
        RRL S+    AG GKVY SKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NAKSAIDALSRPL+TED      S  LP
Subjt:  RRLRSS----AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLP

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]2.1e-3597.56Show/hide
Query:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSI
        MEERRLRSSAGSGKVY SKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPS+
Subjt:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSI

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]9.1e-2379.73Show/hide
Query:  ERRLRSSAGS--GKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED
        +RRLRSSAG+  GKVY S+GLRARR RLSAPTAI+FYD+QDRLG +RPTE +DWLL+NAKSAIDALSRPLET D
Subjt:  ERRLRSSAGS--GKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein7.6e-2374.42Show/hide
Query:  RRLRSS----AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLP
        RRL S+    AG GKVY SKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NAKSAIDALSRPL+TED      S  LP
Subjt:  RRLRSS----AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLP

A0A1S3B7T4 transcription factor TCP10-like2.0e-2384.93Show/hide
Query:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED
        RRL SS  AG+GKVY SKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AIDALSRPL+TED
Subjt:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED

A0A5A7UTZ9 Transcription factor TCP10-like2.0e-2384.93Show/hide
Query:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED
        RRL SS  AG+GKVY SKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AIDALSRPL+TED
Subjt:  RRLRSS--AGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETED

A0A6J1KM30 transcription factor PCF8-like1.0e-3597.56Show/hide
Query:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSI
        MEERRLRSSAGSGKVY SKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPS+
Subjt:  MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSI

A0A6J5UKD4 TCP domain-containing protein3.4e-1575Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRP
        KVY SKG R RR RLSAPTAIQFYD+QDRLGY+RP++AIDWL++ AK+AI+ALS P
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRP

SwissProt top hitse value%identityAlignment
A2WM14 Transcription factor PCF54.7e-1467.92Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL
        KV  ++G R RR+RLSA TAIQFYD+QDRLGY+RP++A+DWL++NAK AID L
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL

A2WV68 Transcription factor PCF71.6e-1459.7Show/hide
Query:  RRLRSSAG----SGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL
        R +RS+AG      KV  ++GLR RR+RL+A TAI+FYD+QDRLGY+RP++A+DWL++NAK+AID L
Subjt:  RRLRSSAG----SGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL

O82277 Transcription factor TCP104.3e-1559.7Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFP
        KV+ SKG R RR+RLSA TAIQFYD+QDRLGY+RP++A+DWL++ AK+AID L     T    R  P
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFP

Q8LT05 Transcription factor PCF71.6e-1459.7Show/hide
Query:  RRLRSSAG----SGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL
        R +RS+AG      KV  ++GLR RR+RL+A TAI+FYD+QDRLGY+RP++A+DWL++NAK+AID L
Subjt:  RRLRSSAG----SGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDAL

Q9MAH8 Transcription factor TCP31.2e-1467.27Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSR
        KV  +KG R RR+RLSAPTAIQFYD+QDRLG++RP++A+DWL+  AKSAID L++
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSR

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 38.8e-1667.27Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSR
        KV  +KG R RR+RLSAPTAIQFYD+QDRLG++RP++A+DWL+  AKSAID L++
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSR

AT2G31070.1 TCP domain protein 103.0e-1659.7Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFP
        KV+ SKG R RR+RLSA TAIQFYD+QDRLGY+RP++A+DWL++ AK+AID L     T    R  P
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFP

AT3G15030.1 TCP family transcription factor 42.8e-1462.96Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS
        KV  +KG R RR+RLSA TAIQFYD+QDRLG++RP++A+DWL++ AK++ID L+
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS

AT3G15030.2 TCP family transcription factor 42.8e-1462.96Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS
        KV  +KG R RR+RLSA TAIQFYD+QDRLG++RP++A+DWL++ AK++ID L+
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS

AT3G15030.3 TCP family transcription factor 42.8e-1462.96Show/hide
Query:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS
        KV  +KG R RR+RLSA TAIQFYD+QDRLG++RP++A+DWL++ AK++ID L+
Subjt:  KVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACGCTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTA
CGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCTTCAGAATGCCAAATCCGCCATTGATGCCCTCTCTCGACCATTAGAAACAGAGG
ACGGCAAGCGTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGT
TTTTGTTTTCTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGG
AATTCTTCGGCATGCAGCCACCGTGTTCAAGTCAGAGCAATGCAACAAGTGGGTTACCATCCTTTCCGATGTGGGAATAGCAGCCGCTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACGCTTCAAAAGGCCTCCGAGCAAGGAGGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTA
CGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCTTCAGAATGCCAAATCCGCCATTGATGCCCTCTCTCGACCATTAGAAACAGAGG
ACGGCAAGCGTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGT
TTTTGTTTTCTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGG
AATTCTTCGGCATGCAGCCACCGTGTTCAAGTCAGAGCAATGCAACAAGTGGGTTACCATCCTTTCCGATGTGGGAATAGCAGCCGCTGGATGA
Protein sequenceShow/hide protein sequence
MEERRLRSSAGSGKVYASKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSAIDALSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHLKISSKMFDYC
FCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSEQCNKWVTILSDVGIAAAG