; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg19878 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19878
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionrhoGEF domain-containing protein gxcI-like
Genome locationCarg_Chr13:7065256..7065858
RNA-Seq ExpressionCarg19878
SyntenyCarg19878
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583958.1 hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]6.8e-9997.51Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADS-DDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSD
        RSRSSSRRKKRVTNNNNKNNHHSDRTPP    AAASATADS DDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSD
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADS-DDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSD

Query:  V
        V
Subjt:  V

KAG7019577.1 hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-103100Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

XP_008443296.1 PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo]6.4e-7377Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS+A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        R     RRKKR     + NNHH   T  + ASA          D   NNN+ISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

XP_023001645.1 rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]7.0e-9694Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAAC+DDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        RSRSSSRRKKRVTNNNNKNNHHSDRTPPAA  A+A+A  D +DDNNNNN+SISMSNL VSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPS V
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

XP_023519997.1 uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo]4.3e-9395.48Show/hide
Query:  IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSP---SSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPR
        IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSP   SSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPR
Subjt:  IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSP---SSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPR

Query:  SRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        SRSSSRRKKRVTNNNNKNNHHSDRTPPAAA AAASATAD DD    NNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
Subjt:  SRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

TrEMBL top hitse value%identityAlignment
A0A0A0M094 Uncharacterized protein1.7e-7177.5Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSSAA  D ASALPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        R     RRKKR       NNHH   T  + ASA    T           NSISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

A0A1S3B8G2 uncharacterized protein LOC1034869133.1e-7377Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS+A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        R     RRKKR     + NNHH   T  + ASA          D   NNN+ISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

A0A5A7UMG1 DUF4228 domain-containing protein3.1e-7377Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS+A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        R     RRKKR     + NNHH   T  + ASA          D   NNN+ISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

A0A6J1KLR7 rhoGEF domain-containing protein gxcI-like3.4e-9694Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAAC+DDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV
        RSRSSSRRKKRVTNNNNKNNHHSDRTPPAA  A+A+A  D +DDNNNNN+SISMSNL VSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPS V
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV

A0A6P5WYR0 ELMO domain-containing protein F-like6.0e-6165.37Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+N+IRCCISCILPCGALDVIRI+HSNG VEEISGSIKAS++MKAHPKHVLKKPSSPS       D   +PKIVIVPP+A+LQRGKIYFLMP+P  P+K 
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKR------VTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESIC
        RS+SSS  KK+       +NNNN N+H                 + S  + N NNN+ISM+NLL+SDQYLSEILSEK ST R+RRRGRVGVWRPHLESI 
Subjt:  RSRSSSRRKKR------VTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESIC

Query:  ESPSD
        E+P+D
Subjt:  ESPSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein3.9e-2838.81Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S             + KI+I+ PE++L+RG IYFL+P    P+K 
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKAS--THRERRR----GRVGVWRPHLESIC
        R R  + R+K+   N            P+A +A      D +              + + ++YL E++S  ++   HR RRR      V  WRP L+SI 
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKAS--THRERRR----GRVGVWRPHLESIC

Query:  E
        E
Subjt:  E

AT1G29195.1 unknown protein7.1e-4655.9Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M+ +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSSP+S     D  SA  KIVIVPPEA+LQRGKIYFLMP   + DK 
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICE
              RR+K     +N N     R+             +  + N+  + +     L+ SD+YL+EILSEK +T ++RR+GRVGVWRPHLESI E
Subjt:  RSRSSSRRKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICE

AT2G30230.1 unknown protein2.1e-2636.63Show/hide
Query:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP
        M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S             + KI+I+ PE++L+RG IYFL+P    P+K 
Subjt:  MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKP

Query:  RSRSSSR---RKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRR----GRVGVWRPHLESI
        +++       RKK + + N+ N+ H             S   D D       + +++    + D  LSE +S     +R RR+      V  WRPHL+SI
Subjt:  RSRSSSR---RKKRVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRR----GRVGVWRPHLESI

Query:  CE
         E
Subjt:  CE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAATAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTTTGGATGTGATCCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGCTCAAT
CAAAGCCTCCGACGTCATGAAAGCCCATCCCAAACATGTCCTTAAGAAGCCCTCCTCCCCCTCATCCTCCGCCGCTTGCTCCGATGACGCCTCCGCCCTCCCCAAGATCG
TCATCGTCCCACCGGAAGCTGACCTCCAACGGGGTAAGATTTATTTCCTCATGCCACTCCCTCCCAACCCTGACAAGCCTCGCTCCCGATCCTCCTCCCGAAGAAAGAAG
AGAGTTACCAATAACAACAATAAAAACAATCATCACTCCGACCGAACACCCCCCGCCGCCGCCTCCGCCGCCGCATCGGCCACCGCCGATTCCGACGACGACAACAACAA
CAACAACAACTCCATTTCCATGTCCAACCTCCTCGTTTCCGACCAGTACCTCTCCGAAATACTCTCCGAGAAAGCCTCCACCCACCGCGAACGGCGGCGAGGCCGTGTCG
GCGTCTGGAGACCTCATTTAGAAAGCATTTGTGAGTCACCCAGCGATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAATAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTTTGGATGTGATCCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGCGGCTCAAT
CAAAGCCTCCGACGTCATGAAAGCCCATCCCAAACATGTCCTTAAGAAGCCCTCCTCCCCCTCATCCTCCGCCGCTTGCTCCGATGACGCCTCCGCCCTCCCCAAGATCG
TCATCGTCCCACCGGAAGCTGACCTCCAACGGGGTAAGATTTATTTCCTCATGCCACTCCCTCCCAACCCTGACAAGCCTCGCTCCCGATCCTCCTCCCGAAGAAAGAAG
AGAGTTACCAATAACAACAATAAAAACAATCATCACTCCGACCGAACACCCCCCGCCGCCGCCTCCGCCGCCGCATCGGCCACCGCCGATTCCGACGACGACAACAACAA
CAACAACAACTCCATTTCCATGTCCAACCTCCTCGTTTCCGACCAGTACCTCTCCGAAATACTCTCCGAGAAAGCCTCCACCCACCGCGAACGGCGGCGAGGCCGTGTCG
GCGTCTGGAGACCTCATTTAGAAAGCATTTGTGAGTCACCCAGCGATGTCTAA
Protein sequenceShow/hide protein sequence
MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKK
RVTNNNNKNNHHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSDV