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Carg19958 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19958
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncopper ion transmembrane transporters
Genome locationCarg_Chr03:4402726..4402995
RNA-Seq ExpressionCarg19958
SyntenyCarg19958
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595352.1 putative DEAD-box ATP-dependent RNA helicase 33, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0848.65Show/hide
Query:  MSILPIPLAIPSPLRPP---LFSLSVSGWFKPPLLLFQSNSDR---------FLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAE
        M I PI LAI +P RPP    FS S++G  +   LL+ SN  R          +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE
Subjt:  MSILPIPLAIPSPLRPP---LFSLSVSGWFKPPLLLFQSNSDR---------FLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAE

Query:  FKTAVSELERP
         K AVSELERP
Subjt:  FKTAVSELERP

KAG6603623.1 hypothetical protein SDJN03_04232, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4098.88Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP
        MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLL QSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP

KAG7033810.1 hypothetical protein SDJN02_03535, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-41100Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP
        MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP

XP_011653656.1 uncharacterized protein LOC101220703 [Cucumis sativus]1.9e-0848.6Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA
        M ILPI LAI  P RPPLFS S S      L        +L ++     +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE K A
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA

Query:  VSELERP
        VS+LERP
Subjt:  VSELERP

XP_038883722.1 uncharacterized protein LOC120074621 [Benincasa hispida]5.3e-1151.4Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLF--------QSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA
        M ILPI LAIP+PLRPPLFS S S      L  F        +S +   +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE K A
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLF--------QSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA

Query:  VSELERP
        V+ELERP
Subjt:  VSELERP

TrEMBL top hitse value%identityAlignment
A0A0A0L2E2 Uncharacterized protein9.1e-0948.6Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA
        M ILPI LAI  P RPPLFS S S      L        +L ++     +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE K A
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA

Query:  VSELERP
        VS+LERP
Subjt:  VSELERP

A0A1S3BKN8 uncharacterized protein LOC1034906411.7e-0746.73Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA
        M IL   L I  PLRPPLFS S S      L        ++ ++ +   +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE K A
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTA

Query:  VSELERP
        VSELERP
Subjt:  VSELERP

A0A6J1DBJ9 uncharacterized protein LOC1110194831.0e-0745.76Show/hide
Query:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPN--------------SNGRR---------------SKKDKQLLKAWLCRERQIY
        M I  I LAIP+P RP LFS S S            N    L Y PN                G R               +KK KQLLKA LCRERQIY
Subjt:  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPN--------------SNGRR---------------SKKDKQLLKAWLCRERQIY

Query:  EMRKRAEFKTAVSELERP
        EMRKRAE K AVSELERP
Subjt:  EMRKRAEFKTAVSELERP

A0A6J1F003 uncharacterized protein LOC1114381637.7e-0846.85Show/hide
Query:  MSILPIPLAIPSPLRPP---LFSLSVSGWFKPPLLLFQSNSDRF---------LGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAE
        M I PI LAI +P RPP    FS S++G  +   LL+  N  R          +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE
Subjt:  MSILPIPLAIPSPLRPP---LFSLSVSGWFKPPLLLFQSNSDRF---------LGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAE

Query:  FKTAVSELERP
         K AVS+LERP
Subjt:  FKTAVSELERP

A0A6J1HU81 uncharacterized protein LOC1114662263.5e-0849.07Show/hide
Query:  MSILPIPLAIPSPLR-PPLFSLSVSGWFKPPLLLFQSNSDRF--------LGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKT
        M I PI LAI +P R PPLFS S S      LL F +             +G  P +             ++KK KQLLKA LCRERQIYEMRKRAE K 
Subjt:  MSILPIPLAIPSPLR-PPLFSLSVSGWFKPPLLLFQSNSDRF--------LGYNPNS----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKT

Query:  AVSELERP
        AVSELERP
Subjt:  AVSELERP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37920.1 copper ion transmembrane transporters6.2e-1081.58Show/hide
Query:  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP
        ++KK KQLLKA LCRERQIYEMRKRAE K AV+ELERP
Subjt:  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCAGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTTCCAATCGAA
TTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGC
GTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCAGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTTCCAATCGAA
TTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGC
GTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAG
Protein sequenceShow/hide protein sequence
MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP