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Carg19959 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19959
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr03:4401165..4401596
RNA-Seq ExpressionCarg19959
SyntenyCarg19959
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595353.1 hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2766.67Show/hide
Query:  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLAT
        MAPFLFLLFIFA+ALL S AV       AAEPPS RKLG H S A V SSPSEAP+SE KV             LEN EHHKS D S+AGGGVILGGLAT
Subjt:  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLAT

Query:  TFLVAIVCYIRATRRQS
        TF VAI+CYIRAT+RQ+
Subjt:  TFLVAIVCYIRATRRQS

KAG6603622.1 hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia]2.1e-70100Show/hide
Query:  MSDPEALFISDLPNSVNRTSKIMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENH
        MSDPEALFISDLPNSVNRTSKIMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENH
Subjt:  MSDPEALFISDLPNSVNRTSKIMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENH

Query:  EHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVSL
        EHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVSL
Subjt:  EHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVSL

KGN54308.1 hypothetical protein Csa_017945 [Cucumis sativus]1.8e-3772.5Show/hide
Query:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG
        ++ PFLFLLFIFANAL  S+A  AAPPPT+AE PS RKLGKH STA+ FSSP+EAPRS  KV   S A+ G +GN +EL NH+HHKS DKS+AGGGVILG
Subjt:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG

Query:  GLATTFLVAIVCYIRATRRQ
        GLATTFLVA++CYIRATRRQ
Subjt:  GLATTFLVAIVCYIRATRRQ

XP_008448528.1 PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo]3.1e-3772.5Show/hide
Query:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG
        ++ PFLFLLFIFANA   S+A  AAPPPT+AE PS RKLGKH STA+ FSSP EAPRSE KV   S A+ G +GN ++L NH+HHKS DKS+AGGGVILG
Subjt:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG

Query:  GLATTFLVAIVCYIRATRRQ
        GLATTFLVAI+CYIRATRRQ
Subjt:  GLATTFLVAIVCYIRATRRQ

XP_022151558.1 uncharacterized protein LOC111019472 [Momordica charantia]2.5e-2663.49Show/hide
Query:  MAPFLFLLFIFANALLGSVAV-----GAAPPP--TAAEPPSGRKLGKHHSTAVVF--SSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGG
        MA FLF+LFIFANA L SV V     GAAP P  T AE PS RKLGKH S A V   SSPSEAPRSE KV   +   T        H +HK+ DKS+AGG
Subjt:  MAPFLFLLFIFANALLGSVAV-----GAAPPP--TAAEPPSGRKLGKHHSTAVVF--SSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGG

Query:  GVILGGLATTFLVAIVCYIRATRRQS
        GVILGGLATTFLVAI+CYIRATRR +
Subjt:  GVILGGLATTFLVAIVCYIRATRRQS

TrEMBL top hitse value%identityAlignment
A0A0A0KXQ0 Uncharacterized protein8.8e-3872.5Show/hide
Query:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG
        ++ PFLFLLFIFANAL  S+A  AAPPPT+AE PS RKLGKH STA+ FSSP+EAPRS  KV   S A+ G +GN +EL NH+HHKS DKS+AGGGVILG
Subjt:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG

Query:  GLATTFLVAIVCYIRATRRQ
        GLATTFLVA++CYIRATRRQ
Subjt:  GLATTFLVAIVCYIRATRRQ

A0A1S3BJV8 uncharacterized protein LOC1034906751.5e-3772.5Show/hide
Query:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG
        ++ PFLFLLFIFANA   S+A  AAPPPT+AE PS RKLGKH STA+ FSSP EAPRSE KV   S A+ G +GN ++L NH+HHKS DKS+AGGGVILG
Subjt:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG

Query:  GLATTFLVAIVCYIRATRRQ
        GLATTFLVAI+CYIRATRRQ
Subjt:  GLATTFLVAIVCYIRATRRQ

A0A5A7TSM2 Uncharacterized protein1.5e-3772.5Show/hide
Query:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG
        ++ PFLFLLFIFANA   S+A  AAPPPT+AE PS RKLGKH STA+ FSSP EAPRSE KV   S A+ G +GN ++L NH+HHKS DKS+AGGGVILG
Subjt:  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILG

Query:  GLATTFLVAIVCYIRATRRQ
        GLATTFLVAI+CYIRATRRQ
Subjt:  GLATTFLVAIVCYIRATRRQ

A0A5D2BCQ1 Uncharacterized protein4.2e-1644.76Show/hide
Query:  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEP-----PSGRKLGKHHSTAVV----FSSPSEAPRSEKKV-------------------STANDGGTGNE
        MA  L L     NA +   A G AP P   EP     P+ RKLGKH           SSPS+AP ++K +                      N    G  
Subjt:  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEP-----PSGRKLGKHHSTAVV----FSSPSEAPRSEKKV-------------------STANDGGTGNE

Query:  IELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRR
        I L+NH HH S+DKSVAGGGVILGGLATTFLVA+ CYIRAT R
Subjt:  IELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRR

A0A6J1DCH7 uncharacterized protein LOC1110194721.2e-2663.49Show/hide
Query:  MAPFLFLLFIFANALLGSVAV-----GAAPPP--TAAEPPSGRKLGKHHSTAVVF--SSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGG
        MA FLF+LFIFANA L SV V     GAAP P  T AE PS RKLGKH S A V   SSPSEAPRSE KV   +   T        H +HK+ DKS+AGG
Subjt:  MAPFLFLLFIFANALLGSVAV-----GAAPPP--TAAEPPSGRKLGKHHSTAVVF--SSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGG

Query:  GVILGGLATTFLVAIVCYIRATRRQS
        GVILGGLATTFLVAI+CYIRATRR +
Subjt:  GVILGGLATTFLVAIVCYIRATRRQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09280.1 unknown protein2.1e-1245.65Show/hide
Query:  APPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRR
        A   + AEPP+ RKLG+H          +EAP       T   G            HH ++++SVAGGGVILGGLATTFLV + CYIRATR+
Subjt:  APPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATCCAGAAGCCCTATTTATTTCCGATCTCCCAAACTCTGTAAATCGCACCTCCAAAATTATGGCTCCATTTCTATTTCTTCTCTTCATCTTCGCCAATGCTCT
TCTCGGTTCTGTCGCTGTCGGAGCCGCTCCACCACCGACCGCGGCCGAACCACCTTCCGGCCGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGT
CTGAGGCACCGCGAAGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTC
GCCGGCGGTGGTGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTCAGCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATCCAGAAGCCCTATTTATTTCCGATCTCCCAAACTCTGTAAATCGCACCTCCAAAATTATGGCTCCATTTCTATTTCTTCTCTTCATCTTCGCCAATGCTCT
TCTCGGTTCTGTCGCTGTCGGAGCCGCTCCACCACCGACCGCGGCCGAACCACCTTCCGGCCGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGT
CTGAGGCACCGCGAAGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTC
GCCGGCGGTGGTGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTCAGCCTCTGA
Protein sequenceShow/hide protein sequence
MSDPEALFISDLPNSVNRTSKIMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSV
AGGGVILGGLATTFLVAIVCYIRATRRQSEVSL