CuGenDBv2

Gene ID	Carg19971
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Genome location	Carg_Chr03:4323552..4323974
RNA-Seq Expression	Carg19971
Synteny	Carg19971
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR000217 - Tubulin IPR002453 - Beta tubulin IPR003008 - Tubulin/FtsZ, GTPase domain IPR013838 - Beta tubulin, autoregulation binding site IPR036525 - Tubulin/FtsZ, GTPase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7033797.1 Tubulin beta-8 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-78

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGLLLICLCF
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGLLLICLCF
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGLLLICLCF

XP_004147894.1 tubulin beta chain [Cucumis sativus]

1.2e-73

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

XP_022151524.1 tubulin beta chain-like [Momordica charantia]

1.2e-73

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

XP_022950702.1 tubulin beta chain-like [Cucurbita moschata]

1.2e-73

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

XP_038880892.1 tubulin beta chain-like [Benincasa hispida]

1.2e-73

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2I9 Tubulin beta chain

5.7e-74

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A1S3BLJ2 Tubulin beta chain

5.7e-74

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1DDB9 Tubulin beta chain

5.7e-74

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1GFK1 Tubulin beta chain

5.7e-74

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1IPB5 Tubulin beta chain

5.7e-74

100

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

SwissProt top hits

e value

%identity

Alignment

P29516 Tubulin beta-8 chain

2.7e-73

93.18

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

P37392 Tubulin beta-1 chain

1.8e-72

92.42

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+Y GD++LQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q56YW9 Tubulin beta-2 chain

1.4e-72

93.94

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q6VAF4 Tubulin beta-9 chain

6.1e-73

93.94

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+Y GDS+LQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q9ASR0 Tubulin beta-3 chain

1.4e-72

93.94

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G12250.1 beta-6 tubulin

3.1e-72

90.15

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEVVC EHGID TG+Y G+SDLQLER+NVYYNEASCGRYVPRA+LMDLEPGTMDS+R+G YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G23860.1 tubulin beta 8

1.9e-74

93.18

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G23860.2 tubulin beta 8

1.9e-74

93.18

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G62690.1 tubulin beta chain 2

9.6e-74

93.94

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G62700.1 tubulin beta chain 3

9.6e-74

93.94

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Query:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+VPRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAGAGATCCTTCACGTTCAGGGTGGGCAATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTTTGCGCCGAGCACGGCATCGATACCACCGGGAAGTATCA
GGGAGATTCCGATCTTCAGCTTGAGAGGATTAATGTCTACTACAATGAAGCTAGTTGCGGGAGGTATGTACCTCGCGCTGTTCTCATGGATCTTGAACCTGGTACTATGG
ACAGTATCAGATCTGGGCTTTATGGTCAGATCTTCCGACCGGATAATTTTGTTTTTGGTCAATCTGGTGCTGGAAACAACTGGGCTAAAGGTCACTACACTGAGGGTGCT
GAGCTTATTGATTCCGTGCTCGATGTCGTCCGGAAGGAGGCGGAGAACTGTGATTGTTTGCAAGGTTTGCTATTGATCTGCCTCTGTTTCTGA

mRNA sequence

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Protein sequence

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MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA
ELIDSVLDVVRKEAENCDCLQGLLLICLCF

Carg19971 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome