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Carg19994 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg19994
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S31, chloroplastic
Genome locationCarg_Chr03:4186735..4187319
RNA-Seq ExpressionCarg19994
SyntenyCarg19994
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR044695 - 30S ribosomal protein S31, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603588.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3765.77Show/hide
Query:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVFCFDFFS
        MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAG    ++ E G   +                                     F 
Subjt:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVFCFDFFS

Query:  EGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
         GNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
Subjt:  EGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

KAG7033775.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-77100Show/hide
Query:  RLLALLHLHPSMASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDV
        RLLALLHLHPSMASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDV
Subjt:  RLLALLHLHPSMASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDV

Query:  FSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
        FSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
Subjt:  FSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

XP_004147884.1 30S ribosomal protein S31, chloroplastic [Cucumis sativus]7.7e-2150.98Show/hide
Query:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVF
        MASLPF L       PR FS SKSE LG SLRASST SLAIST S PSSIPA    +  K++    R                                 
Subjt:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVF

Query:  CFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLF
            F+     ARPRDKTKGRGTPRVP PPSP RK KFDD+EKIKIEIDESLF
Subjt:  CFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLF

XP_022151467.1 30S ribosomal protein S31, chloroplastic [Momordica charantia]2.7e-2147.31Show/hide
Query:  ALLHLHPSMASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVS
        +LL+ H SMASLPF           L PR FS SKSETLG SLRA ST SLA S TS PSS+PA    +  K++    R                     
Subjt:  ALLHLHPSMASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVS

Query:  FSFVFDVFSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
                        F+     ARPRDKTKGRGTPRVP PP+P RK KF+DDEKIKIEID+SLF+R
Subjt:  FSFVFDVFSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

XP_038882305.1 30S ribosomal protein S31, chloroplastic [Benincasa hispida]4.5e-2149.37Show/hide
Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF
        MASLPF           L PR FS SKSETLG SLRASST SLA STTS PSSIPA    +  K++    R                             
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF

Query:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS
                F+     ARPR+KTKGRGTPRVP PPSP RK KF+DDEKIKIEIDESLF+
Subjt:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS

TrEMBL top hitse value%identityAlignment
A0A0A0KXY4 Uncharacterized protein3.7e-2150.98Show/hide
Query:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVF
        MASLPF L       PR FS SKSE LG SLRASST SLAIST S PSSIPA    +  K++    R                                 
Subjt:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVF

Query:  CFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLF
            F+     ARPRDKTKGRGTPRVP PPSP RK KFDD+EKIKIEIDESLF
Subjt:  CFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLF

A0A1S3BL51 30S ribosomal protein S31, chloroplastic4.9e-2149.37Show/hide
Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF
        M SLPF           L P  FS SKSETLG SLRASST SLAIST S PSSIPA    +  K++    R                             
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF

Query:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS
                F+     ARPRDKTKGRGTPRVP PPSP RK KFDDDEKIKIEIDESLF+
Subjt:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS

A0A5A7TU27 30S ribosomal protein S314.9e-2149.37Show/hide
Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF
        M SLPF           L P  FS SKSETLG SLRASST SLAIST S PSSIPA    +  K++    R                             
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF

Query:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS
                F+     ARPRDKTKGRGTPRVP PPSP RK KFDDDEKIKIEIDESLF+
Subjt:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS

A0A6J1DDL3 30S ribosomal protein S31, chloroplastic1.3e-2147.31Show/hide
Query:  ALLHLHPSMASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVS
        +LL+ H SMASLPF           L PR FS SKSETLG SLRA ST SLA S TS PSS+PA    +  K++    R                     
Subjt:  ALLHLHPSMASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVS

Query:  FSFVFDVFSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
                        F+     ARPRDKTKGRGTPRVP PP+P RK KF+DDEKIKIEID+SLF+R
Subjt:  FSFVFDVFSFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

A0A6J1HRX4 30S ribosomal protein S31, chloroplastic1.7e-1848.43Show/hide
Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF
        MASLPF           L PR FS SKSETLG SLR +STG+   S TS PSSIPA    +  K++    R                             
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVF

Query:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
                F      ARPRDKTKGRGTPRVP PPSP RK KFDDDEKIKIEIDESLFSR
Subjt:  SFVFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

SwissProt top hitse value%identityAlignment
O80439 30S ribosomal protein S31, chloroplastic3.7e-1036.54Show/hide
Query:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSF
        MASL    PPR          S S SET G+SL +  T   ++ST+S  SSIP     +  +++    R                               
Subjt:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSF

Query:  VFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS
              F+     ARPR+K+KGRG  RVP+PP+P RK KF++DEKIKI+IDESLFS
Subjt:  VFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS

Arabidopsis top hitse value%identityAlignment
AT2G38140.1 plastid-specific ribosomal protein 42.7e-1136.54Show/hide
Query:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSF
        MASL    PPR          S S SET G+SL +  T   ++ST+S  SSIP     +  +++    R                               
Subjt:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSF

Query:  VFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS
              F+     ARPR+K+KGRG  RVP+PP+P RK KF++DEKIKI+IDESLFS
Subjt:  VFCFDFFSEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGCTTGCTCGCTCTGCTTCATCTTCATCCGTCCATGGCTTCTCTTCCTTTCAGACTGCCTCCTCGTTCTTTCTCCATCTCCAAATCTGAAACCCTAGGAATATCTCTGCG
TGCTTCGTCTACTGGTTCTCTCGCAATCTCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGGTATGTATCTAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGG
AAATGTATGTGTCTCATCTACTCTCTTCGTTTTCTTCGATTCTTTTTCTGACTGTGAGTTTCTCTTTTGTCTTCGATGTGTTCTCTTTCGTTTTTTGTTTTGATTTCTTT
TCGGAGGGGAATGATCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACGCCGAGAGTACCAATTCCTCCTTCTCCGCTTAGGAAGGTTAAATTTGATGACGATGA
GAAAATCAAGATCGAGATTGATGAGTCTCTTTTCTCTAGATAA
mRNA sequenceShow/hide mRNA sequence
CGCTTGCTCGCTCTGCTTCATCTTCATCCGTCCATGGCTTCTCTTCCTTTCAGACTGCCTCCTCGTTCTTTCTCCATCTCCAAATCTGAAACCCTAGGAATATCTCTGCG
TGCTTCGTCTACTGGTTCTCTCGCAATCTCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGGTATGTATCTAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGG
AAATGTATGTGTCTCATCTACTCTCTTCGTTTTCTTCGATTCTTTTTCTGACTGTGAGTTTCTCTTTTGTCTTCGATGTGTTCTCTTTCGTTTTTTGTTTTGATTTCTTT
TCGGAGGGGAATGATCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACGCCGAGAGTACCAATTCCTCCTTCTCCGCTTAGGAAGGTTAAATTTGATGACGATGA
GAAAATCAAGATCGAGATTGATGAGTCTCTTTTCTCTAGATAA
Protein sequenceShow/hide protein sequence
RLLALLHLHPSMASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGMYLKRRKESGSSTRSEMYVSHLLSSFSSILFLTVSFSFVFDVFSFVFCFDFF
SEGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR