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Carg20011 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20011
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionkinetochore protein SPC24 homolog
Genome locationCarg_Chr03:4033153..4035103
RNA-Seq ExpressionCarg20011
SyntenyCarg20011
Gene Ontology termsGO:0051983 - regulation of chromosome segregation (biological process)
InterPro domainsIPR044951 - Kinetochore protein SPC24-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027420.1 hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-6877.72Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST----------------INDLD
        M DF+GK NIE+LLSYGDDLVALL DQNDVQTLNQCL+HF  LQSSS DD  NV SSVQDYEKKIE CR KTEEA+A T                IN+LD
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST----------------INDLD

Query:  RQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP
        RQRISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE DPT +SSFDICN IWNMINSP
Subjt:  RQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP

KAG7033758.1 hypothetical protein SDJN02_03483 [Cucurbita argyrosperma subsp. argyrosperma]9.4e-86100Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRISVQERKQAMKKL
        MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRISVQERKQAMKKL
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRISVQERKQAMKKL

Query:  EQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP
        EQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP
Subjt:  EQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP

XP_022950424.1 uncharacterized protein LOC111453528 [Cucurbita moschata]1.3e-7982.59Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSS FDDFSNVQSSVQDYEKKIEACRQKTEEAR ST                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_022978290.1 uncharacterized protein LOC111478320 [Cucurbita maxima]1.7e-7982.09Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        MADFAGKFNIEE+LSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSS FDDFSNVQSSVQDYEKKIEACRQKTEEA+AST                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_023544537.1 uncharacterized protein LOC111804085 [Cucurbita pepo subsp. pepo]4.2e-7881.59Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        MADFAGKF IEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSS FDDFSNVQSS QDYEKKIEACRQKTEEARAST                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICN IWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

TrEMBL top hitse value%identityAlignment
A0A1S3CKZ4 uncharacterized protein LOC1035021536.4e-6468.16Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        M DFA   NIEEL S+ DDLVA+L D  DV  LNQCLEHFKTLQSS  DDF++VQSSV+DYEKKI+ACR+KTEEA+A+T                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    IN+L+RQR+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEFDPT ISSFD CNG+WNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X13.1e-6671.64Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        M DF+GK NIEELLSYG+DLVALL DQ DVQTLNQCLEH K LQS   DDFSNV SSVQDYEKKIEACRQKTEEA+A T                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    IN+LD QRISVQERKQAMKKLEQQELR QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FE DPT  S+FDICN IW+MINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1F034 uncharacterized protein LOC1114381845.2e-6670.65Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        M DF+GK NIE+LLSYGDDLVALL DQNDVQTLNQCL+HF  LQSSS DD  NV SSVQDYEKKIE CR KTEEA+A T                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    IN+LDRQRISVQE+KQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE DPT +SSFDICN IWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1GFS1 uncharacterized protein LOC1114535286.4e-8082.59Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSS FDDFSNVQSSVQDYEKKIEACRQKTEEAR ST                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1IPN8 uncharacterized protein LOC1114783208.3e-8082.09Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------
        MADFAGKFNIEE+LSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSS FDDFSNVQSSVQDYEKKIEACRQKTEEA+AST                     
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARAST---------------------

Query:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
                    INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS
Subjt:  ------------INDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

SwissProt top hitse value%identityAlignment
Q67XT3 Kinetochore protein SPC24 homolog2.5e-3337.69Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEAR------------------------
        M + +  F+IE+L+SYGDDL+ LLN +N    ++Q  E FK L  +  +DF+ +Q S++D + K+ AC++KTEEA                         
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEAR------------------------

Query:  ---------ASTINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMIN
                 A  + DL+ Q  S+ E KQ+ K+  + +LR ++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F+   +++++ CN IW++IN
Subjt:  ---------ASTINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMIN

Arabidopsis top hitse value%identityAlignment
AT3G08880.1 unknown protein1.8e-3437.69Show/hide
Query:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEAR------------------------
        M + +  F+IE+L+SYGDDL+ LLN +N    ++Q  E FK L  +  +DF+ +Q S++D + K+ AC++KTEEA                         
Subjt:  MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEAR------------------------

Query:  ---------ASTINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMIN
                 A  + DL+ Q  S+ E KQ+ K+  + +LR ++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F+   +++++ CN IW++IN
Subjt:  ---------ASTINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMIN

AT5G01570.1 unknown protein1.4e-2333.91Show/hide
Query:  NIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRIS-------------------
        N E ++S+GD+L+ +L+D+     L Q LE  + +  S  +DF  +  S+QD +KK++ C++KT+EA +   ++ + +R+                    
Subjt:  NIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRIS-------------------

Query:  ---VQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISS-FDICN
            +E + A+K+ ++ +LRT+ KL MYASVT +IPN+DD  K SG++V R+KR++ +FEFD    +S ++ CN
Subjt:  ---VQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISS-FDICN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTTCGCCGGAAAGTTCAACATCGAGGAGCTTTTATCTTATGGTGACGATCTGGTAGCGCTCTTGAACGACCAAAATGACGTTCAAACCTTGAATCAATGTCT
TGAACATTTCAAGACGCTTCAATCTTCTTCCTTCGATGATTTCAGTAATGTTCAAAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACAGAGG
AGGCGAGAGCGAGCACTATTAATGATCTAGACCGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAATGAAGAAACTCGAGCAACAAGAACTTAGGACGCAGAGGAAG
CTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATT
CGACCCGACTAATATATCTTCTTTTGATATATGCAATGGAATTTGGAATATGATTAATTCCCCATAG
mRNA sequenceShow/hide mRNA sequence
TCTCCCCTGAAATTTCCCCTACTTCCAGGAACCTCGTTGTCGATTTGTTGTTCAATTAACAGGAATGGCAGATTTCGCCGGAAAGTTCAACATCGAGGAGCTTTTATCTT
ATGGTGACGATCTGGTAGCGCTCTTGAACGACCAAAATGACGTTCAAACCTTGAATCAATGTCTTGAACATTTCAAGACGCTTCAATCTTCTTCCTTCGATGATTTCAGT
AATGTTCAAAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACAGAGGAGGCGAGAGCGAGCACTATTAATGATCTAGACCGCCAAAGGATTTC
TGTTCAAGAAAGGAAGCAGGCAATGAAGAAACTCGAGCAACAAGAACTTAGGACGCAGAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACG
ATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCGACTAATATATCTTCTTTTGATATATGCAATGGAATTTGG
AATATGATTAATTCCCCATAGTACCATACATCCATTAC
Protein sequenceShow/hide protein sequence
MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSSFDDFSNVQSSVQDYEKKIEACRQKTEEARASTINDLDRQRISVQERKQAMKKLEQQELRTQRK
LSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP