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Carg20028 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20028
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein SCAR
Genome locationCarg_Chr03:3958007..3959517
RNA-Seq ExpressionCarg20028
SyntenyCarg20028
Gene Ontology termsGO:0030036 - actin cytoskeleton organization (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005856 - cytoskeleton (cellular component)
GO:0003779 - actin binding (molecular function)
InterPro domainsIPR028288 - SCAR/WAVE family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603552.1 Protein SCAR2, partial [Cucurbita argyrosperma subsp. sororia]2.2e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

KAG7033741.1 Protein SCAR2 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

XP_022949801.1 protein SCAR2-like isoform X1 [Cucurbita moschata]2.2e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

XP_022949802.1 protein SCAR2-like isoform X2 [Cucurbita moschata]2.2e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

XP_022978068.1 protein SCAR2 isoform X1 [Cucurbita maxima]2.8e-5199.07Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAE+PSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

TrEMBL top hitse value%identityAlignment
A0A6J1GD25 Protein SCAR1.0e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

A0A6J1GD42 Protein SCAR1.0e-51100Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

A0A6J1IRY0 Protein SCAR1.4e-5199.07Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAE+PSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

A0A6J1IRY5 Protein SCAR1.4e-5199.07Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAE+PSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

A0A6J1IT32 Protein SCAR1.4e-5199.07Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAE+PSIEKAFLSQTNHT
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        SFFTGAG
Subjt:  SFFTGAG

SwissProt top hitse value%identityAlignment
Q5QNA6 SCAR-like protein 24.1e-2953.72Show/hide
Query:  MPLTRYQIRNEYGLADPELY-------------------KAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQ
        MPL R+++RNE GL DP+LY                   K   + +P+ALLEGVA+AGLVG+LRQLGDLAEFAA+VFHDLHE+VI+T+ARG  ++ RVQ 
Subjt:  MPLTRYQIRNEYGLADPELY-------------------KAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQ

Query:  LEAEVPSIEKAFLSQTNHTSF
        +EA +PS+EKA  +Q +H  F
Subjt:  LEAEVPSIEKAFLSQTNHTSF

Q5XPJ6 Protein SCAR41.8e-3771.03Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        M LTRYQIRNEYGLAD ELY++ADK+DPEALLE  +MAGLVGVLRQLGDL+EFAAEVFH LHE++++TAARGH L +R+Q LEA+ PS+E   LSQT+H+
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        +FF   G
Subjt:  SFFTGAG

Q5XPJ9 Protein SCAR22.6e-4481.31Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQ RNEYGLADP+LY+AADKDDPEALLEGVAMAGLVG+LRQLGDLAEFAAE+FHDLHEEV++TA+R H LM RVQQLEAE PSIEKA L QT+H+
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
         FF+  G
Subjt:  SFFTGAG

Q6AWX6 Protein SCAR17.0e-2956.6Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPL R Q+RN YGL   EL+   D++DP+A+L+ VA++GLVG+LRQLGDL EFAAE+FH + EEV+ TA+R + L +R++Q+EA+VP+I+K  L+QTNH 
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SF-FTG
         F +TG
Subjt:  SF-FTG

Q84TX2 SCAR-like protein 14.4e-3974Show/hide
Query:  LTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF
        + RYQIRNEYGL+DPELY   +KDDPEALLEGVAMAGLVGVLRQLGDLAEFAAE+FHDLHE+V++TA+RGH LM+R++QLEAE P++EKA +SQ++H+++
Subjt:  LTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF

Arabidopsis top hitse value%identityAlignment
AT1G29170.1 SCAR family protein7.9e-2859.18Show/hide
Query:  RNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF-FTG
        RN YG+   E+Y+  D++DP+A+L GVA+ GLVGVLRQLGDLAEFAAE+FH + EEV++TA+R + L IR+Q +EA VP +EKA L+QT H  F +TG
Subjt:  RNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF-FTG

AT1G29170.2 SCAR family protein7.9e-2859.18Show/hide
Query:  RNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF-FTG
        RN YG+   E+Y+  D++DP+A+L GVA+ GLVGVLRQLGDLAEFAAE+FH + EEV++TA+R + L IR+Q +EA VP +EKA L+QT H  F +TG
Subjt:  RNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSF-FTG

AT2G34150.2 SCAR family protein5.0e-3056.6Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPL R Q+RN YGL   EL+   D++DP+A+L+ VA++GLVG+LRQLGDL EFAAE+FH + EEV+ TA+R + L +R++Q+EA+VP+I+K  L+QTNH 
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SF-FTG
         F +TG
Subjt:  SF-FTG

AT2G38440.1 SCAR homolog 21.9e-4581.31Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        MPLTRYQ RNEYGLADP+LY+AADKDDPEALLEGVAMAGLVG+LRQLGDLAEFAAE+FHDLHEEV++TA+R H LM RVQQLEAE PSIEKA L QT+H+
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
         FF+  G
Subjt:  SFFTGAG

AT5G01730.1 SCAR family protein 41.3e-3871.03Show/hide
Query:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT
        M LTRYQIRNEYGLAD ELY++ADK+DPEALLE  +MAGLVGVLRQLGDL+EFAAEVFH LHE++++TAARGH L +R+Q LEA+ PS+E   LSQT+H+
Subjt:  MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHT

Query:  SFFTGAG
        +FF   G
Subjt:  SFFTGAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCTGACTCGGTACCAAATTAGGAACGAGTACGGCTTGGCGGATCCGGAGCTGTACAAGGCTGCTGATAAAGATGATCCTGAAGCTCTTCTTGAAGGCGTTGCCAT
GGCTGGCCTTGTCGGAGTCTTGCGCCAGCTCGGTGACCTTGCTGAGTTTGCTGCTGAGGTATTCCACGACTTACACGAAGAGGTCATTTCAACGGCTGCAAGAGGCCATA
GTCTTATGATTCGTGTGCAGCAACTTGAGGCAGAAGTTCCTTCAATTGAGAAAGCATTTCTGTCCCAAACAAATCATACATCTTTCTTCACTGGTGCAGGTTAG
mRNA sequenceShow/hide mRNA sequence
TAACGGGGACTCAGACGACCGTATATTAATTCATCCGTTCACATCTTTTCATCGATTCTCAATTAACTCAGCTTTTTCCCAAACCAAAAATTTTCAACTGAAGATACTCA
TATGCTGCAAATTACAAATTGGCCGATGAGAAATGTAGAAGGAAGGACAATCGGAGTACGGCGGTGAATTTGAGAACCAGTGGAATTGCAGTTTCGAGCTTGAGGAGGAA
GAAGAAGAAGAAGAAGAAATGCCGCTGACTCGGTACCAAATTAGGAACGAGTACGGCTTGGCGGATCCGGAGCTGTACAAGGCTGCTGATAAAGATGATCCTGAAGCTCT
TCTTGAAGGCGTTGCCATGGCTGGCCTTGTCGGAGTCTTGCGCCAGCTCGGTGACCTTGCTGAGTTTGCTGCTGAGGTATTCCACGACTTACACGAAGAGGTCATTTCAA
CGGCTGCAAGAGGCCATAGTCTTATGATTCGTGTGCAGCAACTTGAGGCAGAAGTTCCTTCAATTGAGAAAGCATTTCTGTCCCAAACAAATCATACATCTTTCTTCACT
GGTGCAGGTTAG
Protein sequenceShow/hide protein sequence
MPLTRYQIRNEYGLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEVFHDLHEEVISTAARGHSLMIRVQQLEAEVPSIEKAFLSQTNHTSFFTGAG