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Carg20054 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20054
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxin-responsive family protein
Genome locationCarg_Chr09:3788673..3789143
RNA-Seq ExpressionCarg20054
SyntenyCarg20054
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591838.1 Protein NARROW LEAF 1, partial [Cucurbita argyrosperma subsp. sororia]5.7e-5396.67Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEERE   EHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISV
        KSKPPKGNEDDDDDHKCIS+
Subjt:  KSKPPKGNEDDDDDHKCISV

KAG7024703.1 hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-80100Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
Subjt:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

XP_011653970.1 auxin-responsive protein SAUR78 [Cucumis sativus]1.8e-5172.39Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+ E+  E             ++VSGSNVI+YVGSTRK+Y I+SKYLSHPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDD-------DDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSK  K  +DDD       DD +CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Subjt:  KSKPPKGNEDDD-------DDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

XP_023536060.1 auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]3.3e-6991.67Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVC+RTM   EEHEEREEH E EE EGFE+VSGSNVIIYVGSTRKRY ISSKYLSHPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSKPPKGN +DDDD +CISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
Subjt:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

XP_038899559.1 auxin-responsive protein SAUR78 [Benincasa hispida]4.1e-5173.89Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+N LLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVC   MEE +  +++++          E+VSG++VI+YVGSTRKRY ISSKYLSHPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPK-GNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSK  K    DDD++  CISVRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Subjt:  KSKPPK-GNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

TrEMBL top hitse value%identityAlignment
A0A1S3B9J9 uncharacterized protein LOC1034876592.7e-4867.27Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+ E+  +++  G             +NV++YVGSTRK+Y I+SKYL HPLLNALID
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHK---------CISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSK  K  +D DD+H+         CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Subjt:  KSKPPKGNEDDDDDHK---------CISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

A0A3N7FTM7 Uncharacterized protein2.9e-3458.97Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   +  +E+E HE                       I+VGSTRKRY ISSKYLSHPL+NALI+
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KS+   G ++       + V+CEVV FDHLLWMLEN+DPN  FDS LEELA+LY+F
Subjt:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

A0A4D6LBI6 Small auxin-up RNA2.2e-3460.26Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+N LLRKCKSLSRQLGRSSSYSSLRSKST+ED+W      E        +EH E                ++VGSTRKRY IS KYL+HPLLN LI+
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSK PKG+ DDD+    + V CEVVLFDHLLWMLEN+DP    +S LEELAELYVF
Subjt:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

A0A6J1C0S4 uncharacterized protein LOC1110073981.2e-4872.61Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALI
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   MEE EE EE     +H++++  E+V GSNVI+YVGSTRK+Y ISSK+LSHPL+NALI
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALI

Query:  DKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        DKSK    ++   +D + ISVRCEVVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Subjt:  DKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

B9RI47 Uncharacterized protein3.4e-3561.54Show/hide
Query:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID
        M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW          +H+E +E  EH+              ++VGSTRKRY ISSKYLSHPL+NALI 
Subjt:  MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALID

Query:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        KSK  +G E        + V+CEVVLFDHLLWMLEN+DPN+ FDS LEELAELYVF
Subjt:  KSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

SwissProt top hitse value%identityAlignment
Q29PU2 Auxin-responsive protein SAUR767.4e-1146.99Show/hide
Query:  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELY
        +YVG TR+ Y +SS  +SHPL    A +D      G+ED       ISV CEVVLF+HLLWMLEN+D +     ++ EL E Y
Subjt:  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELY

Q9C9E1 Auxin-responsive protein SAUR785.6e-1140.48Show/hide
Query:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        ++YVG TR+ Y +    +SHPL   L+D+S      +D +     I V CEVVLF+HLLWML++         ++EELAE Y +
Subjt:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

Q9LQI6 Auxin-responsive protein SAUR771.9e-1140.45Show/hide
Query:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENS-----DPNICFDSNLEELAELYVF
        ++YVG +R+ Y +SS  ++HPL   L+D+S       ++  D + + V CEVVLF+HLLWML+NS     D +     ++EELAE Y +
Subjt:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENS-----DPNICFDSNLEELAELYVF

Arabidopsis top hitse value%identityAlignment
AT1G17345.1 SAUR-like auxin-responsive protein family1.4e-1240.45Show/hide
Query:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENS-----DPNICFDSNLEELAELYVF
        ++YVG +R+ Y +SS  ++HPL   L+D+S       ++  D + + V CEVVLF+HLLWML+NS     D +     ++EELAE Y +
Subjt:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENS-----DPNICFDSNLEELAELYVF

AT1G72430.1 SAUR-like auxin-responsive protein family4.0e-1240.48Show/hide
Query:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
        ++YVG TR+ Y +    +SHPL   L+D+S      +D +     I V CEVVLF+HLLWML++         ++EELAE Y +
Subjt:  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

AT3G12955.1 SAUR-like auxin-responsive protein family7.3e-2243.23Show/hide
Query:  MKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDK
        M++  +LR+CKS+S QLGRS SY+SLRSKS R D        ++H +  ++                     + VG T+K Y IS K+L HPLLNAL++K
Subjt:  MKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDK

Query:  SKPPKGNEDDDDDHKC-ISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYV
         +  +  EDD++D  C I+V+CEVVLFDHLLWMLE  D     +S L++ A LY+
Subjt:  SKPPKGNEDDDDDHKC-ISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYV

AT5G20810.1 SAUR-like auxin-responsive protein family3.3e-0632.1Show/hide
Query:  EVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSN
        +V   N+ +YVG   +R+ I + YLSH L   L++K++     E   D    +++ CEV  F +LL  +EN+  ++  D N
Subjt:  EVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSN

AT5G20820.1 SAUR-like auxin-responsive protein family5.2e-1246.99Show/hide
Query:  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELY
        +YVG TR+ Y +SS  +SHPL    A +D      G+ED       ISV CEVVLF+HLLWMLEN+D +     ++ EL E Y
Subjt:  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATG
GGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGGAGAACACGAAGAACGTGAAGGGTTTGAAGAGGTGAGTGGCAGTAATGTAATTA
TCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCCAAGGGCAATGAAGAT
GATGATGATGATCATAAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTT
GGAGGAATTGGCTGAACTTTATGTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATG
GGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGGAGAACACGAAGAACGTGAAGGGTTTGAAGAGGTGAGTGGCAGTAATGTAATTA
TCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCCAAGGGCAATGAAGAT
GATGATGATGATCATAAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTT
GGAGGAATTGGCTGAACTTTATGTGTTTTGA
Protein sequenceShow/hide protein sequence
MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNED
DDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF