CuGenDBv2

Gene ID	Carg20060
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Genome location	Carg_Chr09:3827303..3830898
RNA-Seq Expression	Carg20060
Synteny	Carg20060
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0031083 - BLOC-1 complex (cellular component)
InterPro domains	IPR017246 - Snapin IPR028119 - Snapin/Pallidin/Snn1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591843.1 hypothetical protein SDJN03_14189, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-35

62.82

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MHGPEKVPDDPANEDSSASVELLTSISRN                                                          ELDQLLEAAPFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

KAG7024708.1 hypothetical protein SDJN02_13526 [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-43

100

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

XP_022936774.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata]

8.6e-31

58.97

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH PEKV DDPANEDSS SVEL TSISRN                                                          ELDQLLEAAPFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGN+PDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

XP_022976873.1 uncharacterized protein LOC111477110 [Cucurbita maxima]

4.3e-30

58.33

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH PEKV DDPANEDSS SVEL TSISRN                                                          ELDQLLE APFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGN+PDTLSSQS SQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

XP_023535159.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo]

1.5e-30

58.33

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH PEKV DDPANEDS+ SVEL TSISRN                                                          ELDQLLE APFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGN+PDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CN29 Biogenesis of lysosome-related organelles complex 1 subunit 7

2.7e-22

70.65

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Query:  DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        D  A++   +  +L +S+ R  +ELDQLLE APFPFIMQHASRIS+VRKRVLSLNSILRSIQRR+DNIDRAI+MGN  DT SSQSS Q QHG
Subjt:  DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 7

2.7e-30

56.44

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN-----------------------------------------------------------------ELDQLL
        MH PEKV DDPANEDSS SVEL TSISRN                                                                 ELDQLL
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN-----------------------------------------------------------------ELDQLL

Query:  EAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        EAAPFPFIMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGN+PDTLSSQSSSQTQHG
Subjt:  EAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 7

4.2e-31

58.97

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH PEKV DDPANEDSS SVEL TSISRN                                                          ELDQLLEAAPFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGN+PDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.3e-20

48.08

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH  EKV DD AN+DS  S EL  SIS N                                                          ELDQLLE APFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHA RISSVRKRVLSLNSILRS+QRR+DNIDR ISM N PD  SSQSSSQ  +G
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 7

2.1e-30

58.33

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Query:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF
        MH PEKV DDPANEDSS SVEL TSISRN                                                          ELDQLLE APFPF
Subjt:  MHGPEKVPDDPANEDSSASVELLTSISRN----------------------------------------------------------ELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGN+PDTLSSQS SQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79070.1 SNARE-associated protein-related

1.6e-14

51.16

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Query:  DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSS
        D  A +  ++  EL  S+ R   ELDQLLE AP PFI+QHASRISSV++RV SLN +L+S+QRR+DNID  +S     +  SS+++
Subjt:  DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSS

Sequences

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CDS sequence

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ATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGC
TGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACA
TAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGA

mRNA sequence

Show/hide mRNA sequence

GAGTAAAGACCTTGACACATTGCTACCTTTTCGGAATTCGGCTAGAAATTCTTCTCTCTGATCCTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTC
TTCTGGATTCGAACGAAGTTTAGAGAGACTGCGAACTACGGTATTGGCTGAGATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTG
TTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGA
GTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTC
GCAAACTCAACATGGTTGAAGATTGTACGTACTCTACAGGCCCTTTTCTCTCTTCACTGAAAATACTGCGATAGAAAGGCTCTGTGTTTATGAACAATCAATTTTGAATG
AACAACATTGGTAATTTATCCATTTGTAAGTTAAGAGTTATGGCTCTGTCACTCTCTCAGGAAAATTTTTAGTCACATATATGTAAATACTCTTTCTTTGACACTATCAA
TTTTATTTTGCTC

Protein sequence

Show/hide protein sequence

MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

Carg20060 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome