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Carg20090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionreplication factor C subunit 4
Genome locationCarg_Chr09:4003761..4006253
RNA-Seq ExpressionCarg20090
SyntenyCarg20090
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005663 - DNA replication factor C complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003689 - DNA clamp loader activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6786129.1 hypothetical protein POTOM_007723 [Populus tomentosa]5.1e-0781.08Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIV
        RVLELNAS DRGINVVRT+IKDFA VA  SGQC GI+
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIV
KAG7024738.1 Replication factor C subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-23100Show/hide
Query:  MGGDVFRVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEVYKSSGLEV
        MGGDVFRVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEVYKSSGLEV
Subjt:  MGGDVFRVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEVYKSSGLEV
XP_024450512.1 replication factor C subunit 2 isoform X1 [Populus trichocarpa]2.5e-0678.38Show/hide
Query:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
        VLELNA  DRGINVV+TRIKDFA VA  SGQC GI+E
Subjt:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
XP_024450513.1 replication factor C subunit 2 isoform X2 [Populus trichocarpa]2.5e-0678.38Show/hide
Query:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
        VLELNA  DRGINVV+TRIKDFA VA  SGQC GI+E
Subjt:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
XP_024450517.1 replication factor C subunit 2 isoform X5 [Populus trichocarpa]2.5e-0678.38Show/hide
Query:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
        VLELNA  DRGINVV+TRIKDFA VA  SGQC GI+E
Subjt:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
TrEMBL top hitse value%identityAlignment
A0A0A0KYI8 AAA domain-containing protein1.6e-0670.45Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
        RVLELNAS DRGINVVRT+IKDFAGVA SSGQ  G    P  ++
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
A0A3N7EMD6 Rep_fac_C domain-containing protein1.2e-0678.38Show/hide
Query:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
        VLELNA  DRGINVV+TRIKDFA VA  SGQC GI+E
Subjt:  VLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVE
A0A5A7UDC8 Replication factor C subunit 41.6e-0670.45Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
        RVLELNAS DRGINVVRT+IKDFAGVA SSGQ  G    P  ++
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
A0A5D3BRF2 Replication factor C subunit 41.6e-0670.45Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
        RVLELNAS DRGINVVRT+IKDFAGVA SSGQ  G    P  ++
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
A0A6J1IVB8 replication factor C subunit 41.6e-0670.45Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
        RVLELNAS DRGINVVRT+IKDFAGVA SSGQ  G    P  ++
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEV
SwissProt top hitse value%identityAlignment
Q54MD4 Probable replication factor C subunit 44.2e-0472.41Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAAS
        RVLELNAS +RGI VVRT+IK+FAG A +
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAAS
Q93ZX1 Replication factor C subunit 44.5e-0683.33Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASS
        RVLELNAS DRGINVVRT+IKDFA VA  S
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASS
Q9FXM3 Replication factor C subunit 27.0e-0768.29Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPY
        RVLELNAS DRGINVVRT+IKDFA VA  S +  G    PY
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPY
Arabidopsis top hitse value%identityAlignment
AT1G21690.1 ATPase family associated with various cellular activities (AAA)3.2e-0783.33Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASS
        RVLELNAS DRGINVVRT+IKDFA VA  S
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASS
AT1G21690.2 ATPase family associated with various cellular activities (AAA)3.2e-0783.33Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASS
        RVLELNAS DRGINVVRT+IKDFA VA  S
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASS
AT1G21690.3 ATPase family associated with various cellular activities (AAA)3.2e-0783.33Show/hide
Query:  RVLELNASGDRGINVVRTRIKDFAGVAASS
        RVLELNAS DRGINVVRT+IKDFA VA  S
Subjt:  RVLELNASGDRGINVVRTRIKDFAGVAASS
AT1G21690.4 ATPase family associated with various cellular activities (AAA)3.2e-0778.12Show/hide
Query:  VFRVLELNASGDRGINVVRTRIKDFAGVAASS
        +F VLELNAS DRGINVVRT+IKDFA VA  S
Subjt:  VFRVLELNASGDRGINVVRTRIKDFAGVAASS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGGAGATGTATTCAGAGTTTTGGAGTTGAATGCAAGTGGTGACCGTGGGATCAATGTTGTTCGGACTAGGATTAAAGATTTTGCTGGTGTTGCAGCAAGCAGTGG
TCAATGCCATGGGATTGTGGAGCTCCCTTACATCGAAGTCTACAAAAGTTCAGGTTTAGAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGGAGATGTATTCAGAGTTTTGGAGTTGAATGCAAGTGGTGACCGTGGGATCAATGTTGTTCGGACTAGGATTAAAGATTTTGCTGGTGTTGCAGCAAGCAGTGG
TCAATGCCATGGGATTGTGGAGCTCCCTTACATCGAAGTCTACAAAAGTTCAGGTTTAGAGGTTTAAGCCACTCTCTTGTAATTTTAATAATTTTCGCATTTGTTCATGC
ACTCAAAGGCAGGGTAGTATCAAGAATTGACGAACTATAATTGCTCTTTAATTAGTTAGTAGTTAGCGGATTAATCATAATTATTATCATAATCATAGGCAGTGTTTGGA
TTTAGTTGCTATTTTAGTGCGTTTTGATGAATAATAAATATAATTTGTTTGTCAAAGATAACTTT
Protein sequenceShow/hide protein sequence
MGGDVFRVLELNASGDRGINVVRTRIKDFAGVAASSGQCHGIVELPYIEVYKSSGLEV