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Carg20100 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20100
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box protein At5g39250-like
Genome locationCarg_Chr14:12035480..12036924
RNA-Seq ExpressionCarg20100
SyntenyCarg20100
Gene Ontology termsNA
InterPro domainsIPR044207 - F-box protein At5g39250-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018604.1 hypothetical protein SDJN02_20474, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-38100Show/hide
Query:  MIENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQHSLLQDCG
        MIENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQHSLLQDCG
Subjt:  MIENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQHSLLQDCG

XP_022930578.1 F-box protein At5g39250-like [Cucurbita moschata]1.2e-2890.41Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        ENTLLFSRVVSGEV QDGLKNPTPRTHNVLSYLQ+ P FKMTLAVEPGFSISIFDT+S+SVLV+CKNSNKVTQ
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

XP_022951059.1 F-box protein At5g39250-like [Cucurbita moschata]2.1e-1765.75Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS+VV G+V QDG+KNPTPRT NVLSYL + P FKMTLAVEPGFSI + DT+ +SV+V  K+S+KV Q
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

XP_022979540.1 F-box protein At5g39250-like [Cucurbita maxima]3.3e-2381.69Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKV
        +NTLLFSR+V GEV QDGLKNPT RT+NVLSYLQ+ P FKMTLAVEPGFSISI DT+S+SVLV+CKNSNKV
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKV

XP_023001983.1 F-box protein At5g39250-like [Cucurbita maxima]3.2e-1868.49Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS+VV GEV QDG+KNPTPRT NVLSYL + P FKMTLAVEPGFSI + DT+S+SV+V  K+S+KV Q
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

TrEMBL top hitse value%identityAlignment
A0A0A0L6S1 F-box domain-containing protein7.9e-1563.01Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E+ L+FS VVSG +FQ+G+KNP P T N+LSY  + PEFKMTL VEP FSI I +TVS SVLV  K+SNKV +
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

A0A6J1EVM4 F-box protein At5g39250-like5.6e-2990.41Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        ENTLLFSRVVSGEV QDGLKNPTPRTHNVLSYLQ+ P FKMTLAVEPGFSISIFDT+S+SVLV+CKNSNKVTQ
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

A0A6J1GHM7 F-box protein At5g39250-like1.0e-1765.75Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS+VV G+V QDG+KNPTPRT NVLSYL + P FKMTLAVEPGFSI + DT+ +SV+V  K+S+KV Q
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

A0A6J1ITK0 F-box protein At5g39250-like1.6e-2381.69Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKV
        +NTLLFSR+V GEV QDGLKNPT RT+NVLSYLQ+ P FKMTLAVEPGFSISI DT+S+SVLV+CKNSNKV
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKV

A0A6J1KS59 F-box protein At5g39250-like1.5e-1868.49Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS+VV GEV QDG+KNPTPRT NVLSYL + P FKMTLAVEPGFSI + DT+S+SV+V  K+S+KV Q
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

SwissProt top hitse value%identityAlignment
Q9FL82 F-box protein At5g392501.2e-0434.25Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS ++ G   ++G++       NVL      P++KM +  EP F+I +  +VS+SVLV   +S+KV +
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ

Arabidopsis top hitse value%identityAlignment
AT5G39250.1 F-box family protein8.7e-0634.25Show/hide
Query:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ
        E  L+FS ++ G   ++G++       NVL      P++KM +  EP F+I +  +VS+SVLV   +S+KV +
Subjt:  ENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAAAACACATTACTCTTTTCAAGAGTGGTTTCGGGTGAAGTCTTCCAGGATGGTTTAAAGAATCCAACACCTCGTACACATAATGTGCTTAGTTATCTACAGCA
AGACCCGGAGTTCAAGATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGACACCGTGAGTATATCCGTGCTCGTGAAATGTAAGAATTCCAACAAAGTTA
CTCAACATAGTCTTTTGCAAGACTGCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGAAAACACATTACTCTTTTCAAGAGTGGTTTCGGGTGAAGTCTTCCAGGATGGTTTAAAGAATCCAACACCTCGTACACATAATGTGCTTAGTTATCTACAGCA
AGACCCGGAGTTCAAGATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGACACCGTGAGTATATCCGTGCTCGTGAAATGTAAGAATTCCAACAAAGTTA
CTCAACATAGTCTTTTGCAAGACTGCGGCTAA
Protein sequenceShow/hide protein sequence
MIENTLLFSRVVSGEVFQDGLKNPTPRTHNVLSYLQQDPEFKMTLAVEPGFSISIFDTVSISVLVKCKNSNKVTQHSLLQDCG