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Carg20103 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20103
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC103483850
Genome locationCarg_Chr14:12085448..12085807
RNA-Seq ExpressionCarg20103
SyntenyCarg20103
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582208.1 hypothetical protein SDJN03_22210, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5499.16Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        MMEERQ VAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
XP_022137815.1 uncharacterized protein LOC111009160 [Momordica charantia]2.7e-4786.55Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APHG++LAVVVA VI+VPF  GD GEA+TEAISDLLSPFGLLLLP++LLL IQFLSSDRGS VSAIFST EPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
XP_022955943.1 uncharacterized protein LOC111457777 [Cucurbita moschata]3.6e-55100Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
XP_022979993.1 uncharacterized protein LOC111479519 [Cucurbita maxima]3.7e-5295.8Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APHGVILAVVVATVILVPFFLGDHGE LTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDD+GD
Subjt:  LFLLYNRISIFGGDDDSGD
XP_023528270.1 uncharacterized protein LOC111791239 [Cucurbita pepo subsp. pepo]7.4e-5396.64Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APHGVILAVVVATVILVPFFLGDHGEA+TEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
TrEMBL top hitse value%identityAlignment
A0A0A0L5U0 Uncharacterized protein1.7e-4787.39Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APH ++LAVVVA VI+VPF LGD GEALT+AISDLLSPFGLLLLPILLLLTIQFLSSDRGS VSAIFS+ EPDSIHRVTGSPVGVALFL+LI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
A0A5A7U157 Uncharacterized protein1.7e-4787.39Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APH ++LAVVVA VI+VPF LGD GEALT+AISDLLSPFGLLLLPILLLLTIQFLSSDRGS VSAIFS+ EPDSIHRVTGSPVGVALFL+LI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
A0A6J1C7Q9 uncharacterized protein LOC1110091601.3e-4786.55Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APHG++LAVVVA VI+VPF  GD GEA+TEAISDLLSPFGLLLLP++LLL IQFLSSDRGS VSAIFST EPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
A0A6J1GVE1 uncharacterized protein LOC1114577771.7e-55100Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDDSGD
Subjt:  LFLLYNRISIFGGDDDSGD
A0A6J1IXX7 uncharacterized protein LOC1114795191.8e-5295.8Show/hide
Query:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
        M+EERQ  APHGVILAVVVATVILVPFFLGDHGE LTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI
Subjt:  MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLI

Query:  LFLLYNRISIFGGDDDSGD
        LFLLYNRISIFGGDDD+GD
Subjt:  LFLLYNRISIFGGDDDSGD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06890.1 unknown protein3.0e-4473.44Show/hide
Query:  MMEERQDV---------APHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPV
        M ++RQ V         APHG+ILAVVVA V+LVPFF+GD GEA+T+AI++LLSP GLLLLPI+LLLTIQFLSS+RGS VSAIFST EP+SIHRV+GSPV
Subjt:  MMEERQDV---------APHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPV

Query:  GVALFLLLILFLLYNRISIFGGDDDSGD
        GVALFL+LILFLLY R SIFGGDD S D
Subjt:  GVALFLLLILFLLYNRISIFGGDDDSGD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGAACGGCAAGACGTAGCTCCACACGGCGTCATACTGGCGGTGGTCGTCGCCACCGTCATTCTCGTCCCTTTCTTCCTCGGCGACCACGGCGAGGCCCTCAC
CGAGGCCATTTCCGATCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCACCATTCAGTTCCTCTCCTCCGATCGCGGCTCCGTCGTCTCCGCCA
TCTTCTCCACCAGCGAGCCCGACTCCATCCACCGCGTCACTGGCTCCCCAGTCGGCGTTGCTCTCTTCCTCCTCCTCATTCTGTTTCTCCTCTATAACCGGATTTCCATC
TTCGGCGGCGACGATGATTCCGGCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGAACGGCAAGACGTAGCTCCACACGGCGTCATACTGGCGGTGGTCGTCGCCACCGTCATTCTCGTCCCTTTCTTCCTCGGCGACCACGGCGAGGCCCTCAC
CGAGGCCATTTCCGATCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCACCATTCAGTTCCTCTCCTCCGATCGCGGCTCCGTCGTCTCCGCCA
TCTTCTCCACCAGCGAGCCCGACTCCATCCACCGCGTCACTGGCTCCCCAGTCGGCGTTGCTCTCTTCCTCCTCCTCATTCTGTTTCTCCTCTATAACCGGATTTCCATC
TTCGGCGGCGACGATGATTCCGGCGACTGA
Protein sequenceShow/hide protein sequence
MMEERQDVAPHGVILAVVVATVILVPFFLGDHGEALTEAISDLLSPFGLLLLPILLLLTIQFLSSDRGSVVSAIFSTSEPDSIHRVTGSPVGVALFLLLILFLLYNRISI
FGGDDDSGD